TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCAGAGGGTAACTTTGTGAATATGTTGTCTCACATCAAAACGAAC
TTCGAAAAATGGTTAGGGACATTTATGATATTTTCCTGCAGAATCCAAAT
TGGTCTGATCTGTTTGTGTAGGCCCTTAAAACTGGAAAAAAAATTAGGGC
AAGGATCAGAGAAAACATTTGATTGGAGGACTTATATCACAAAGATACCT
GGCTTCAAAGAGGGAGAAATTTTCTAAATATGTAGAAGTATTTGAAGCTT
TTAAAAGCTTGCAGCATAAATATGTTATAAAATAAATAAGCCTTAATAAA
AAGTAAGATGTTNNNTTGCNCTCCGANGCGANTGCCCATTCCATCATGGT
AGTGAAAAAAAAAAATCTGGCTACCAAAANGAAAAAAATGGGGTTGGGAG
TCTGGTCACATTGTTTATAGTCATAAGTGGAGTGCAGTGCATGCTATATT
ACCACCTACTCTCTCTGTTCTATATGGATCAGCATTGCAGCCCATAGAAT
GGTCCCGCACTTGTTCAAGGGAGCTTTTCTTATGCCACTTCACATTATCC
AGATACTTCCTCACAGCCATGTCCAGAGATTTGTCTCCTGGATCATTCTA
GAACCCATCGAGCTGACATTTCAACCATCACAGCTTCTGCCTGTATCATG
CATAAAGGGATCAGTCTCCATGTCCGTTGAATTTG

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCATCCCCACCACCTCAGACAAAT
CCATCAGTGTGTTGAAATGCAATGAATTGAAAGGATGTTCTTTCTTTCTT
CCTTTCTTCATTCCTTCCTTCCTCTCTCTCTCTCTCTCTCCCTCTCTTTC
TCTCTTTTTAGTAATTTAGTGGTTTAATTTTGTTTGAACTGAAAAAATTT
ATCATTAATTATATGAGTCTTTAAATGACTGCTGACATAAATATAAATGC
AATATTGCACACTTAATAAAGGTGTGTGTGTGTGTTTGTTAGTGACTTGT
AGTAAAGAATTATTAAATACCAAAGGAAATTTGCAAAAGTAAACAAACTT
AAAATTTTAAAATTTCTACTATGCTAGTGAATGTGATGAAATGGGTCAGT
GTTCCATGTAGTATGTCCTGTACAATGAATCAATACTTGTGTCCAGCTTA
TCCATGCTCTGTATCTTAATCTCCTCTTAGTAGCTCTTAAGATTACAACA
CTCACCACCAGAGTACTGCAGTTTTTATATTTATGTAAATTACATATTTT
AAAGAAAGACTTCAAGGTTAGGGAGCAACAGTACCAGCATTATTTTTCTA
AAGCACACGTGAAAATGCTTCTTTTAAAGAAAAGATGAAAGCTGAACTAT
TANAAATTGTTTACAAAGTT

Query= MSMg01no267_d10.b1 MSMg01no267_d10.b1 CHROMAT_FILE:
MSMg01no267_d10.b1 PHD_FILE: MSMg01no267_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:13 2005
         (318 letters)



>mm_chr8_39360871_39361588
          Length = 718

 Score =  598 bits (309), Expect = e-175
 Identities = 312/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcccagagggtaactttgtgaatatgttgtctcacatcaaaacgaacttcgaaaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcccagagggtaactttgtgaatatgttgtctcacatcaaaacgaacttcgaaaa 263

                                                                       
Query: 64  atggttagggacatttatgatattttcctgcagaatccaaattggtctgatctgtttgtg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atggttagggacatttatgatattttcctgcagaatccaaattggtctgatctgtttgtg 323

                                                                       
Query: 124 taggcccttaaaactggaaaaaaaattagggcaaggatcagagaaaacatttgattggag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taggcccttaaaactggaaaaaaaattagggcaaggatcagagaaaacatttgattggag 383

                                                                       
Query: 184 gacttatatcacaaagatacctggcttcaaagagggagaaattttctaaatatgtagaag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gacttatatcacaaagatacctggcttcaaagagggagaaattttctaaatatgtagaag 443

                                                                       
Query: 244 tatttgaagcttttaaaagcttgcagcataaatatgttataaaataaataagccttaata 303
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 444 tatttgaagcttttaaaagcttgcagcataaatatgttaaaaaataaataagccttaata 503

                        
Query: 304 aaaagtaagatgt 316
           |||||||||||||
Sbjct: 504 aaaagtaagatgt 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no267_d10.g1 MSMg01no267_d10.g1 CHROMAT_FILE:
MSMg01no267_d10.g1 PHD_FILE: MSMg01no267_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:13 2005
         (287 letters)



>mm_chr8_39510943_39511629
          Length = 687

 Score =  553 bits (286), Expect = e-162
 Identities = 286/286 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatccccaccacctcagacaaatccatcagtgtgttgaaatgcaatgaattgaaaggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tcatccccaccacctcagacaaatccatcagtgtgttgaaatgcaatgaattgaaaggat 558

                                                                       
Query: 61  gttctttctttcttcctttcttcattccttccttcctctctctctctctctctccctctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gttctttctttcttcctttcttcattccttccttcctctctctctctctctctccctctc 498

                                                                       
Query: 121 tttctctctttttagtaatttagtggtttaattttgtttgaactgaaaaaatttatcatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tttctctctttttagtaatttagtggtttaattttgtttgaactgaaaaaatttatcatt 438

                                                                       
Query: 181 aattatatgagtctttaaatgactgctgacataaatataaatgcaatattgcacacttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aattatatgagtctttaaatgactgctgacataaatataaatgcaatattgcacacttaa 378

                                                         
Query: 241 taaaggtgtgtgtgtgtgtttgttagtgacttgtagtaaagaatta 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 taaaggtgtgtgtgtgtgtttgttagtgacttgtagtaaagaatta 332


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)