BAC Information

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BAC

Clone NameMSMg01-267G04
Chromosome8 (Build37)
Map Location 30,716,484 - 30,907,503
singlet/doubletdoublet
Overlap genenone
Upstream geneUnc5d, LOC100041237
Downstream geneEG628189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267G04.T7 (MSMg01no267_g04.b1)MSMg01-267G04.TJ (MSMg01no267_g04.g1)
ACCAG408120AG408121
length736741
length of high quality
(start - end)
316 (46 - 361)332 (388 - 719)
definitionCHROMAT_FILE: MSMg01no267_g04.b1 PHD_FILE: MSMg01no267_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:26 2005CHROMAT_FILE: MSMg01no267_g04.g1 PHD_FILE: MSMg01no267_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,907,192 - 30,907,503)(30,716,484 - 30,716,815)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGTCTTGTCCTGATGACTTCATGAAAATAATTGAAATCTTATGA
ACACTGGCTTTGTCTTCAGCTTCCCAATGAACCATCCATGAAATGAACAA
ACATAAGTTCCAGCTGGGTAGGTGGATAAAAATAGGAAGAATGCTTTTAG
GGAGGGATTTAAATAATAAAGGATGTGTAAGTTTAAGAGGAAAAATTCAG
TATTCTCAAGGAACTTGATGTGTAGAGACCTCTGAGTTATAAATAAGGAA
TTATGGGAAATGTATAGAGATTGGAAGAAGGTACCACACACACTTTTCAA
GAAATGAGAATTGNCTACNATCCCAATCGAGCCCAGTTTGGTGTTTTTCC
TGATACATGGTTTAAAAATCAATTATAAAAAGATATGTGTGCTCATGTAG
AAAGACAGACTCGATTTAATGAGACATTATACCACATCTGCAGAAGTAGA
GTACCAAGGAAAAGTGAAGAGGCCTGTTTCACTCTGCTGGAGAGGCTGAA
AGAGCACCTAGTGTGATAATATAGGCCTTGGAGAATTAAAAAAAAACACT
TTCTATGCATTTTATGAATATAGAAAGAATATTTTGAGGGCTCCAGACAC
AAACTAATGATAGTTTGAGGTACTAATGGTATTAAATTGATCAGCATACA
GTGCATAAATCTAAACTTACCTAAATTCACACCATN
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACATGGTTGCCTAAACAAGA
CATAGACAATGACAGCACCAGTTGTTCTTACAACATGGGTGGAAGAAGTC
TCACCAGACATCACCCCTACATAAAGAGATAAGATACAGGCAACTAATGT
CTGCTGAGAGAGGGAGAATCAGTGTTGTCCAGGGATGTCTTTCAGATCCC
TATCCAACCCTAAATAGCCAGCCTAGAACAAGTGTTCATATGAGCAACAC
TAAAAGGACTCATAAGATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGAAACAGTAATATTTTATAAGTCCCGACTATGAGAGCAAGTAGGGGC
CTGTGGGAGGAGTTGAAGATGGGAAGAGGCTGGGTTAAAATAGTAATGTT
GGAACTCCAGAATTCATGTGTGAGAAAAAAATATCTAAAATGAAAGTTTA
AAATTAGTTCCTATTGAAGTAGAGAGTAAAATGTGGCAATGGAAATAAGG
AACAACAACCAAACATCAGACAGAAAGAGAACGGAGGCAGGTGCCTGTAA
GGATGTGGGGAAAGAGGGAGTGGATTGGTGGGAACATAACTGTCTTAGTC
AGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAAGTTGGGGAG
GAAAGGGTTTACTCGGCTTACACTTCCATACTGCTGTTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_g04.b1 MSMg01no267_g04.b1 CHROMAT_FILE:
MSMg01no267_g04.b1 PHD_FILE: MSMg01no267_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:26 2005
         (316 letters)



>mm_chr8_30906989_30907704
          Length = 716

 Score =  580 bits (300), Expect = e-170
 Identities = 309/312 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccagtcttgtcctgatgacttcatgaaaataattgaaatcttatgaacactggc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ggaattccagtcttgtcctgatgacttcatgaaaataattgaaatcttatgaacactggc 456

                                                                       
Query: 64  tttgtcttcagcttcccaatgaaccatccatgaaatgaacaaacataagttccagctggg 123
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tttgtcttcagctttgaaatgaaccatccatgaaatgaacaaacataagttccagctggg 396

                                                                       
Query: 124 taggtggataaaaataggaagaatgcttttagggagggatttaaataataaaggatgtgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 taggtggataaaaataggaagaatgcttttagggagggatttaaataataaaggatgtgt 336

                                                                       
Query: 184 aagtttaagaggaaaaattcagtattctcaaggaacttgatgtgtagagacctctgagtt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aagtttaagaggaaaaattcagtattctcaaggaacttgatgtgtagagacctctgagtt 276

                                                                       
Query: 244 ataaataaggaattatgggaaatgtatagagattggaagaaggtaccacacacacttttc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ataaataaggaattatgggaaatgtatagagattggaagaaggtaccacacacacttttc 216

                       
Query: 304 aagaaatgagaa 315
           ||||||||||||
Sbjct: 215 aagaaatgagaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no267_g04.g1 MSMg01no267_g04.g1 CHROMAT_FILE:
MSMg01no267_g04.g1 PHD_FILE: MSMg01no267_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:27 2005
         (332 letters)



>mm_chr8_30716284_30717015
          Length = 732

 Score =  634 bits (328), Expect = 0.0
 Identities = 331/332 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcaagtaggggcctgtgggaggagttgaagatgggaagaggctgggttaaaatagtaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcaagtaggggcctgtgggaggagttgaagatgggaagaggctgggttaaaatagtaat 260

                                                                       
Query: 61  gttggaactccagaattcatgtgtgagaaaaaaatatctaaaatgaaagtttaaaattag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttggaactccagaattcatgtgtgagaaaaaaatatctaaaatgaaagtttaaaattag 320

                                                                       
Query: 121 ttcctattgaagtagagagtaaaatgtggcaatggaaataaggaacaacaaccaaacatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcctattgaagtagagagtaaaatgtggcaatggaaataaggaacaacaaccaaacatc 380

                                                                       
Query: 181 agacagaaagagaacggaggcaggtgcctgtaaggatgtggggaaagagggagtggattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agacagaaagagaacggaggcaggtgcctgtaaggatgtggggaaagagggagtggattg 440

                                                                       
Query: 241 gtgggaacataactgtcttagtcagggtttctattcctgcacaaacatcatgaccaagaa 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 gtgggaacataactgtcttagtcagggtttctattcctacacaaacatcatgaccaagaa 500

                                           
Query: 301 gcaagttggggaggaaagggtttactcggctt 332
           ||||||||||||||||||||||||||||||||
Sbjct: 501 gcaagttggggaggaaagggtttactcggctt 532


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)