BAC Information

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BAC

Clone NameMSMg01-267O06
Chromosome8 (Build37)
Map Location 37,655,920 - 37,752,801
singlet/doubletdoublet
Overlap geneDlc1, LOC100042892
Upstream geneMfhas1, LOC100041572, Gm501, Cldn23, LOC671641, D8Ertd82e, Lonrf1, EG544878, 6430573F11Rik
Downstream geneA730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121, LOC621149, Sgcz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267O06.T7 (MSMg01no267_o06.b1)MSMg01-267O06.TJ (MSMg01no267_o06.g1)
ACCAG408483AG408484
length732721
length of high quality
(start - end)		314 (46 - 359)641 (75 - 715)
definitionCHROMAT_FILE: MSMg01no267_o06.b1 PHD_FILE: MSMg01no267_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:03 2005CHROMAT_FILE: MSMg01no267_o06.g1 PHD_FILE: MSMg01no267_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,655,920 - 37,656,230)(37,752,161 - 37,752,801)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGACAACCCTGCCTGGCTCTACCTCCTAGCCCTGCCCGTGACT
CTCTCATTTTACTCCACACAGTGGCAGCTTTGACTCCCTCACTGTACCTG
AGGCCAGTTCCATTAACTCTTCAGAAGGGTTGCTGCTTTTGCTGTCAAAT
GGTAACAAAATATGGGATGGTGCTACCCGAGGGCCTCCAAGGACAGCCAG
CATTGGATGCTATTTCAGTGGCACTATTACATAACAGAATTTTACTTCAG
CGTTCATCAAACGGTCTATAGCACAGCAGCATCAATCACTGTGTCATTTG
ATAATCAAAGATTTTTTGTGCGCCCCCCCACCCCCCAAATTTATCAATCA
TTTTTTTTTTTTACTCTCTTGAGGCAGGAAATCTCTGTGCCGCTCTGGAA
CTCACTCTGTACACAAGGTTGTCCTTGAACTTGGCTTGGGGCCTGCCCCT
GCCCCCTGAGTGCTGAGACTGAAGTACTGTGTTTTTAAAGGAGAGGAAAA
TGTCAGGTTACCTGCAGAGAGCCTCGATGGCGTCTCTGTCCAAGAAGTCA
TGTTCTCTCTTGACCAGCGCAATATCAATAGGGAACAGTAGATCTGTAAG
AAGAGCAAAGACAAGGACGTTTGTTGAGAGCCCAGGATCTTGACAAATTA
GACTCTTCTGGCAAGATGCTGAGTATCTGTGG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGTGCGTATAGCTGCGCCCCCTGGA
GGCAAGAAGTGGGAGTACGATCCTTTGGAACTGGAGTTAGAGGCTGTTGT
AAGCAGCTTGGTGGTGTGGGTACTGGCAATCAACTCTGGTCCCCTCCAAA
CCTCCCCTGGGAAGAACAGCAGGTGGTTTAAACTCTGCACTATCTCTCCA
AGTGCCCTGTCCTTTACTTTTTAGTTGAACAGCAACAAAAGACAAATAGG
CAATGACTTTCAAGGAGGCTATGTTCGATCAGCTTGGAAGAGCACCTATG
GCTGTGTATTTGATTAGAACTCCCGGGAAGTGTCTGATGGCTGGCCATGA
CAGTTTCTAACGCTATCCACACCAGCAGAGACTTAACATAGCATTTATAA
AGCTCTCCTGTAATCAGCATTTTCTGGCTGAGAGTGCAAGAAATGCATTG
CTGGCTGGTGTTAGCGAAACATCAAAGTCCTTTCTTAGAGAGCTGTGTCC
GTTTCCCGCCTGTTTGGTGTGCATGAAATCAGTGAACCTAATAAAGTAAG
GCTTGTTAAGAAGAGCAACAAAGTTGCTGGCGTTCTTTATGAGTGGGCAG
CCGCCACAGAAGAGATCAAAGCCAGCTCCGGTGGGGTCTGGACATCTGTT
TTCTTTTTACGCAGAGTGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_o06.b1 MSMg01no267_o06.b1 CHROMAT_FILE:
MSMg01no267_o06.b1 PHD_FILE: MSMg01no267_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:03 2005
         (314 letters)



>mm_chr8_37655717_37656430
          Length = 714

 Score =  594 bits (307), Expect = e-174
 Identities = 310/311 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaggacaaccctgcctggctctacctcctagccctgcccgtgactctctcatt 63
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 204 ggaattccaggacaaccctgcctggctctacctcctagccctgcccatgactctctcatt 263

                                                                       
Query: 64  ttactccacacagtggcagctttgactccctcactgtacctgaggccagttccattaact 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttactccacacagtggcagctttgactccctcactgtacctgaggccagttccattaact 323

                                                                       
Query: 124 cttcagaagggttgctgcttttgctgtcaaatggtaacaaaatatgggatggtgctaccc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cttcagaagggttgctgcttttgctgtcaaatggtaacaaaatatgggatggtgctaccc 383

                                                                       
Query: 184 gagggcctccaaggacagccagcattggatgctatttcagtggcactattacataacaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gagggcctccaaggacagccagcattggatgctatttcagtggcactattacataacaga 443

                                                                       
Query: 244 attttacttcagcgttcatcaaacggtctatagcacagcagcatcaatcactgtgtcatt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 attttacttcagcgttcatcaaacggtctatagcacagcagcatcaatcactgtgtcatt 503

                      
Query: 304 tgataatcaaa 314
           |||||||||||
Sbjct: 504 tgataatcaaa 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no267_o06.g1 MSMg01no267_o06.g1 CHROMAT_FILE:
MSMg01no267_o06.g1 PHD_FILE: MSMg01no267_o06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:03 2005
         (641 letters)



>mm_chr8_37751836_37752876
          Length = 1041

 Score = 1232 bits (637), Expect = 0.0
 Identities = 640/641 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtgcgtatagctgcgccccctggaggcaagaagtgggagtacgatcctttggaactgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 cagtgcgtatagctgcgccccctggaggcaagaagtgggagtacgatcctttggaactgg 907

                                                                       
Query: 61  agttagaggctgttgtaagcagcttggtggtgtgggtactggcaatcaactctggtcccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 agttagaggctgttgtaagcagcttggtggtgtgggtactggcaatcaactctggtcccc 847

                                                                       
Query: 121 tccaaacctcccctgggaagaacagcaggtggtttaaactctgcactatctctccaagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 tccaaacctcccctgggaagaacagcaggtggtttaaactctgcactatctctccaagtg 787

                                                                       
Query: 181 ccctgtcctttactttttagttgaacagcaacaaaagacaaataggcaatgactttcaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 ccctgtcctttactttttagttgaacagcaacaaaagacaaataggcaatgactttcaag 727

                                                                       
Query: 241 gaggctatgttcgatcagcttggaagagcacctatggctgtgtatttgattagaactccc 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 gaggcgatgttcgatcagcttggaagagcacctatggctgtgtatttgattagaactccc 667

                                                                       
Query: 301 gggaagtgtctgatggctggccatgacagtttctaacgctatccacaccagcagagactt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gggaagtgtctgatggctggccatgacagtttctaacgctatccacaccagcagagactt 607

                                                                       
Query: 361 aacatagcatttataaagctctcctgtaatcagcattttctggctgagagtgcaagaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 aacatagcatttataaagctctcctgtaatcagcattttctggctgagagtgcaagaaat 547

                                                                       
Query: 421 gcattgctggctggtgttagcgaaacatcaaagtcctttcttagagagctgtgtccgttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gcattgctggctggtgttagcgaaacatcaaagtcctttcttagagagctgtgtccgttt 487

                                                                       
Query: 481 cccgcctgtttggtgtgcatgaaatcagtgaacctaataaagtaaggcttgttaagaaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cccgcctgtttggtgtgcatgaaatcagtgaacctaataaagtaaggcttgttaagaaga 427

                                                                       
Query: 541 gcaacaaagttgctggcgttctttatgagtgggcagccgccacagaagagatcaaagcca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gcaacaaagttgctggcgttctttatgagtgggcagccgccacagaagagatcaaagcca 367

                                                    
Query: 601 gctccggtggggtctggacatctgttttctttttacgcaga 641
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gctccggtggggtctggacatctgttttctttttacgcaga 326


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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