BAC Information

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BAC

Clone NameMSMg01-267P07
Chromosome8 (Build37)
Map Location 42,960,918 - 43,130,481
singlet/doubletdoublet
Overlap geneLOC671994
Upstream geneSlc7a2, Pdgfrl, Mtus1, Fgl1, Pcm1, Asah1, Frg1, LOC100039376, Gm1815
Downstream geneZfp353, EG620772, LOC628212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267P07.T7 (MSMg01no267_p07.b1)MSMg01-267P07.TJ (MSMg01no267_p07.g1)
ACCAG408532AG408533
length730716
length of high quality
(start - end)
311 (46 - 356)235 (128 - 362)
definitionCHROMAT_FILE: MSMg01no267_p07.b1 PHD_FILE: MSMg01no267_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:08 2005CHROMAT_FILE: MSMg01no267_p07.g1 PHD_FILE: MSMg01no267_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,130,177 - 43,130,481)(42,960,918 - 42,961,149)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAACACATTACAACTACATTAAAATATTTTTCATCTGCTCCATTGA
GTTGAATAGACTAGTTTAATTAGTTTGCTAATAATTTGTACAGATAGACA
ATTCTACAAAGAGTTGAAAACACGTTTCTTCTCACCAAAACATGCTTCCC
TGAATAACTATTGTGTTTTGACAGTTGTGTATGTTGGGAATAGGGGGAAA
GACTCACACTTGACCTTGAAAAACATACTCAAAAACTGCTTACACTAATT
TCTCACCAAGTTAGAGAGCTGTATGTTTCAAGGCTTCCTTTTTGCTGACA
GATGNGTCTCNCCTTGCNTCTAAGNACGNGACCTTTGATAGTGTTAGGGA
NAGGAATTCTTTAGCTATAAAACTCGTAGGAAAGTTGAGGGGCCGGGGAC
GTGATTAGACTTGGTGGTCTTGTGTGTTTTATCAACCAGTGACATCATGA
CAGATGAGAATGTTCTGCCAAGGAAAGTCAAAATTTCCTAACATTAATGT
ATCCACAGACAAATCACATGTACTAAATGTCATTTAACCCATACAATGAT
TTGAATGTAATCCAGACTCAAAGCAGGAAAAGCAACTTTACTACTGCCAG
ACTTATTATAATGGGACATTTGACTCAATGCAGAATGCCGTCAGGATCCG
CAAATGCTTGTGAGTTGAATTTAATAGTTN
CGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCAGGAAGGACCAGCTAGAGCCT
GGTGGATTGTTAGTTTTATATCCGAGGATCCTTAATGTCTAGTCCAGTGA
TGAGTGTGTCTATAAAACTCAAGCTGTTAAGTTAGGAAATGAACTTGACA
TACCGCTACTCTCTACTTTGTCTTTGGGATACTGAAAAATATGTAATTCT
AAATATGTATTTGTAATTTTTATCTTCCATTCATCCCTTAGTTGGTCACT
ACTTGTATGCTTATTTCTTATTGGATGTTGTCTCCCCTAGGATTCCTTAG
AAGAAAATCTTTTATTTCCTTCGCCCCACCCATATTTTATTATGAATGGA
GCCTAAGCTGAGGGGAAAGGAGAGGAGTGAAGTGGGCAAGCAGGAGCTGC
AAATGCAAATGTATCGCTGCTGACTTGGTCTTTAACTAGCCTCACAAATA
TCATCATAAAGAGCATTAGATGTTTGTGCCCGACCAAATAGCTCAACCAA
GGAGTGGGTAGCACTAGAATTAGGCTGGGACTAATTGCCTTCCATATGCC
AAGTTTCACCTCACAAGATCCATCTCCCTTTCGTTTCTGGGGACCACATA
TTCTGATGTCCTAGTGCATCCTATTCTTTAGCTTTAACAAAAATCCATGT
GTAGAGGAAAAATGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_p07.b1 MSMg01no267_p07.b1 CHROMAT_FILE:
MSMg01no267_p07.b1 PHD_FILE: MSMg01no267_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:08 2005
         (311 letters)



>mm_chr8_43129973_43130683
          Length = 711

 Score =  582 bits (301), Expect = e-171
 Identities = 304/305 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaacacattacaactacattaaaatatttttcatctgctccattgagttgaatag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gaattcaacacattacaactacattaaaatatttttcatctgctccattgagttgaatag 450

                                                                       
Query: 65  actagtttaattagtttgctaataatttgtacagatagacaattctacaaagagttgaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 actagtttaattagtttgctaataatttgtacagatagacaattctacaaagagttgaaa 390

                                                                       
Query: 125 acacgtttcttctcaccaaaacatgcttccctgaataactattgtgttttgacagttgtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 acacgtttcttctcaccaaaacatgcttccctgaataactattgtgttttgacagttgtg 330

                                                                       
Query: 185 tatgttgggaatagggggaaagactcacacttgaccttgaaaaacatactcaaaaactgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tatgttgggaatagggggaaagactcacacttgaccttgaaaaacatactcaaaaactgc 270

                                                                       
Query: 245 ttacactaatttctcaccaagttagagagctgtatgtttcaaggcttcctttttgctgac 304
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 269 ttacactaatttctcaccaagttagagagctgtatgcttcaaggcttcctttttgctgac 210

                
Query: 305 agatg 309
           |||||
Sbjct: 209 agatg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no267_p07.g1 MSMg01no267_p07.g1 CHROMAT_FILE:
MSMg01no267_p07.g1 PHD_FILE: MSMg01no267_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:08 2005
         (235 letters)



>mm_chr8_42960718_42961352
          Length = 635

 Score =  449 bits (232), Expect = e-131
 Identities = 232/232 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atccttaatgtctagtccagtgatgagtgtgtctataaaactcaagctgttaagttagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atccttaatgtctagtccagtgatgagtgtgtctataaaactcaagctgttaagttagga 260

                                                                       
Query: 61  aatgaacttgacataccgctactctctactttgtctttgggatactgaaaaatatgtaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgaacttgacataccgctactctctactttgtctttgggatactgaaaaatatgtaat 320

                                                                       
Query: 121 tctaaatatgtatttgtaatttttatcttccattcatcccttagttggtcactacttgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctaaatatgtatttgtaatttttatcttccattcatcccttagttggtcactacttgta 380

                                                               
Query: 181 tgcttatttcttattggatgttgtctcccctaggattccttagaagaaaatc 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcttatttcttattggatgttgtctcccctaggattccttagaagaaaatc 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)