Query= MSMg01no268_d05.b1 MSMg01no268_d05.b1 CHROMAT_FILE:
MSMg01no268_d05.b1 PHD_FILE: MSMg01no268_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:26 2005
(318 letters)
>mm_chr8_50015465_50016182
Length = 718
Score = 594 bits (307), Expect = e-174
Identities = 310/311 (99%)
Strand = Plus / Plus
Query: 5 gaattcagcccttagagtacaggtcatgtcttagtctatatagccactttatgatatccc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagcccttagagtacaggtcatgtcttagtctatatagccactttatgatatccc 264
Query: 65 acaagggtcctgttttccatttctgtaaacacacctccatcggtattgaggagtgagcac 124
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 265 acaagggtcctgttttccatttctgtaaacacacctccatcggcattgaggagtgagcac 324
Query: 125 cagaccacgaacttatgctgaaagctatctgccatgccattttaaagtatagttcctgtc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagaccacgaacttatgctgaaagctatctgccatgccattttaaagtatagttcctgtc 384
Query: 185 tcatgccaagaaagattacctcctaattatcaagggccaaaatatctccagactaattcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcatgccaagaaagattacctcctaattatcaagggccaaaatatctccagactaattcc 444
Query: 245 tatctgatctcagacaaaactgaacaaacttcccagtggtgatttgagacatattttgaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tatctgatctcagacaaaactgaacaaacttcccagtggtgatttgagacatattttgaa 504
Query: 305 gtgagtttacc 315
|||||||||||
Sbjct: 505 gtgagtttacc 515
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no268_d05.g1 MSMg01no268_d05.g1 CHROMAT_FILE:
MSMg01no268_d05.g1 PHD_FILE: MSMg01no268_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:26 2005
(288 letters)
>mm_chr8_50171021_50171712
Length = 692
Score = 426 bits (220), Expect = e-123
Identities = 274/294 (93%), Gaps = 8/294 (2%)
Strand = Plus / Minus
Query: 1 taatggcactgattcacaaaacggagatgaagttctgggatgcttccaagtgtacggcga 60
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 492 taatggcactgattcacaaaacagagatgaagttctgggatgcttccgagtgtacggcga 433
Query: 61 attaacaaatga-gagactaggttaaaccttcaaacactgagaacagttgaagtttaaaa 119
|||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 432 attaacaaatgagga-actaggttaaaccttcaaacactgagaacggttgaagtttaaaa 374
Query: 120 ataataaaaaggcatcagaacattaaaagattttttcatcaacagtt----tattttatg 175
|||| |||||| ||| |||||||||||||||||||||||||||||| ||||||| |
Sbjct: 373 ataa-aaaaagccatgggaacattaaaagattttttcatcaacagttagtttattttagg 315
Query: 176 atggaaaa-tattataaaaaattaagcagaggcaacttttcctactcgaaacacggtatc 234
|||||||| |||||||||||||||||||||||||||||| ||||||| |||||| |||||
Sbjct: 314 atggaaaaatattataaaaaattaagcagaggcaactttccctactcaaaacacagtatc 255
Query: 235 attgtgatataagttaaagaatcccaaaaaaattgccagtcagaatatcgcttg 288
||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 254 attgtgatataagttaaagaatcccaagaaaattgccagtcagaatattgcttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 692
Length adjustment: 9
Effective length of query: 279
Effective length of database: 683
Effective search space: 190557
Effective search space used: 190557
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
