BAC Information

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BAC

Clone NameMSMg01-268J05
Chromosome8 (Build37)
Map Location 65,467,407 - 65,467,699
singlet/doubletsinglet
Overlap geneSpock3
Upstream geneBC013672, Anxa10, LOC100040775, LOC384830, LOC100040804, LOC665267
Downstream geneLOC384831, EG244495
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268J05.T7 (MSMg01no268_j05.b1)MSMg01-268J05.TJ (MSMg01no268_j05.g1)
ACCAG408954AG408955
length736737
length of high quality
(start - end)
317 (46 - 362)295 (76 - 370)
definitionCHROMAT_FILE: MSMg01no268_j05.b1 PHD_FILE: MSMg01no268_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:53 2005CHROMAT_FILE: MSMg01no268_j05.g1 PHD_FILE: MSMg01no268_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCCACCTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATT
AGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCT
GTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTT
TCTCCTCTATAAGTTTCTGNGTCTCTCCCCCCCCGCGAAGTTCCTTGATC
CACTTAGATTTGACCTTAGTACAAGGAGATAAAAAAGGATCGATTCGCAT
TCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGC
TGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGA
CCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTC
TACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTC
TGTAGTAAAGCTTTAGGTCTGGCATGGTGATTCTGCCAGAAGTTCTTTTA
TCCTTGAGAAGACTTTTTGCTATCCTAGGTTTTTTG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATCAAACTAATACAATTTTCTAGT
CTTTTGAGACTGGTTTCATAAGGTTAGGACATTTCCTTTTGTGGTTTCCA
TAATTGCAATGTAGAAAATTAAAACCACAACAAGTACTGTTACTGTGACT
CAGTCATCTTTGGGGGCAATGATTCTACTGTTCCTCACTCAACCACGAAG
TCATGGATCCCATAATAGGAACTAAGATGGTTCTGCCTAAGCACTGGGTA
AAATAGTCTGAATTGGTTTGTTGGTCTGACCTTGGACCAAAAAATGTCAG
TAATGGTCCATACTTTGTTTCAGCAACGACCTACCTGGTACTAATGCTTA
GATACTCATAGTTCCTTCTGGTTTCAAGAGATCTCCCTTTAGCTCACCAA
ATGGATCTTTAGGTAGGCAGTATTGACACAGGATTACAGGGTTAAGAGAT
AAACCTGAGTTTTGTGGTCATGAGTTTGTTTTTTGTTGGTGGGAGAGAGT
ATAATTGTTATCAATACAGTGATAGCAGAGTAAAGCTAGATTACAAGCAG
CTTAGGGATCCAGTCATCCAAATGAGTTTTGGTCACTTGAGATTTGCATA
AATAGGGGCATATAAAGATCAAAGCTCATGGGCTAAAATTAAAATATAAA
TGGCACTTCAAGTGCCATTTGTTCTGAAGATGGCAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_j05.g1 MSMg01no268_j05.g1 CHROMAT_FILE:
MSMg01no268_j05.g1 PHD_FILE: MSMg01no268_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:53 2005
         (295 letters)



>mm_chr8_65467207_65467902
          Length = 696

 Score =  551 bits (285), Expect = e-161
 Identities = 291/293 (99%), Gaps = 1/293 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatcaaactaatacaattttctagtcttttgagactggtttcataaggttaggacatttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aatcaaactaatacaattttctagtcttttgagactggtttcataaggttaggacatttc 434

                                                                       
Query: 61  cttttgtggtttccataattgcaatgtagaaaattaaaaccacaacaagtactgttactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 cttttgtggtttccataattgcaatgtagaaaattaaaaccacaacaagtactgttactg 374

                                                                       
Query: 121 tgactcagtcatctttgggggcaatgattctactgttcctcactcaaccacgaagtcatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tgactcagtcatctttgggggcaatgattctactgttcctcactcaaccacgaagtcatg 314

                                                                       
Query: 181 gatcccataataggaactaagatggttctgcctaagcactgggtaaaatagtctgaattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gatcccataataggaactaagatggttctgcctaagcactgggtaaaatagtctgaattg 254

                                                                
Query: 241 gtttgttggtctgaccttggaccaaaaaatgtcagta-atggtccatactttg 292
           |||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 253 gtttgttggtctgaccttggaccaaaaaatgtcagtatctggtccatactttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 696
Length adjustment: 9
Effective length of query: 286
Effective length of database: 687
Effective search space:   196482
Effective search space used:   196482
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)