BAC Information

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BAC

Clone NameMSMg01-269D22
Chromosome8 (Build37)
Map Location 26,035,992 - 26,036,309
singlet/doubletsinglet
Overlap geneAdam32
Upstream geneZmat4, 1810011O10Rik, Indol1, Indo, Adam18, Adam3, Adam5
Downstream geneAdam9, Tm2d2, Htra4, Plekha2, LOC100042390, Tacc1, LOC670822, LOC100040998, Fgfr1, D030041N04Rik, LOC100042416, Whsc1l1, Ppapdc1, Bag4, Lsm1, Star, Ash2l, Kcnu1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269D22.T7 (MSMg01no269_d22.b1)MSMg01-269D22.TJ (MSMg01no269_d22.g1)
ACCAG409423AG409424
length734734
length of high quality
(start - end)		323 (44 - 366)427 (72 - 498)
definitionCHROMAT_FILE: MSMg01no269_d22.b1 PHD_FILE: MSMg01no269_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:40 2005CHROMAT_FILE: MSMg01no269_d22.g1 PHD_FILE: MSMg01no269_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTTTTCTTTATGGCTCCAATATCCCGCCAGTTATTTTAAACTCTATT
ATTTAATCTCCATTTGTTTTCTGTAGTTCCTGAAATTTCTCCTGCTGCCG
ACTTCTGCTTCATTCCATTATGGTGTGTTGAGTTTCAAGAAAGTCTTTCA
ACAACTTCATCTTGTATTTACTTTTAGATTTACTTATTTTATGTGTTAAG
GGTAGTCGCCGGCACATATGTCTGTGTACTAGATGCATGCTTGGTGCCCA
CCGAGGTCAAAATAAGGGCATCAGATTCCCTGGGACTGGAGTTATGGATG
TTTGTAAGGCATGACTATGTTGGGAATCCACCCTGAGTCCTCTTCAAGAA
CAAGTGCCCTTAACCACCGAGCCTTAGCTCTAGCTCCTTAGTTTGTGTTT
CTAAAGACTGGCTTCATTGTCTACAAAGCAATGCATTTTGAAGAAAGCCG
ATTAATATGAGTACTGAATAGGTCAAAGGCACTGGGGCCAATGGGTTCTC
TCTGGGGCTGGGTTGTGCAGTCTGGACTGGTCCTGAGTTCCAGGATGAAG
CCCAGGGCTTTCAGCAGACCTGCAGGCAGAGTCTTGCATCCCCTGAGCTT
TGACACACATGACGAAAGCTCTCCTTGGCTCCTGGCTAAAGTCCATCTAG
AAGCTCAGTCTGAAGATGCTAAACTGGAATTGAG

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGTGGTTTTCAGGTAAATACTTGAGGGCT
AGAAACAATCCTCCTGAGTAAGGTGGTCTAGACCCAAAAGGCAAATATTT
CCTAATTTTTTTATATGATGAGGATGTTAGCCTTTAATATTTAGATATGT
GTGCTTCAATTAGAATAGCCAGAGAGGTTAGGTACCTCTTAAGGGACCAG
GGTAGAAGGCTGGACCTCCCCAGGAAGGGGAAACAGAATAGTATTATGGA
GCGATAAAAGGGAAACTAGAACAGGGAAAACTAAATAGGGAGGAGTGGGA
CCTAAGAGTAAAGGAGCAAATATGAGGAAGAACAAGTAATGTTAAGGGGC
TTTTGAAAAAAAACATATGGAAACCTACTACTGTAGAAGCGTCTCTATGT
GTGTATGTGTGTGTGTATTGTATAGNTATATGTATGTATGAAAGNAANNN
NNNNNNNNNNNNNNNNNNNNNNNNNANNNNNNNNNNNNNTNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTNNNNANNANNNANNANNNANANNNNANNNAN
ANNNNNNNAAANNNNNNNNAAANAANNNNNNNAAAAAANNAANNAAANAN
AANNNNNNNNNNNNAAAAAANNAAAAANAAANNNNNAAAANNNAAAAAAA
AAAANNAAANAAANNAANNNAAAAANAAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_d22.b1 MSMg01no269_d22.b1 CHROMAT_FILE:
MSMg01no269_d22.b1 PHD_FILE: MSMg01no269_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:40 2005
         (323 letters)



>mm_chr8_26035920_26036642
          Length = 723

 Score =  592 bits (306), Expect = e-173
 Identities = 315/318 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttttctttatggctccaatatcccgccagttattttaaactctattatttaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gaattccttttctttatggctccaatatcccgccagttattttaaactctattatttaat 331

                                                                       
Query: 65  ctccatttgttttctgtagttcctgaaatttctcctgctgccgacttctgcttcattcca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ctccatttgttttctgtagttcctgaaatttctcctgctgccgacttctgcttcattcca 271

                                                                       
Query: 125 ttatggtgtgttgagtttcaagaaagtctttcaacaacttcatcttgtatttacttttag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ttatggtgtgttgagtttcaagaaagtctttcaacaacttcatcttgtatttacttttag 211

                                                                       
Query: 185 atttacttattttatgtgttaagggtagtcgccggcacatatgtctgtgtactagatgca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 atttacttattttatgtgttaagggtagtcgccggcacatatgtctgtgtactagatgca 151

                                                                       
Query: 245 tgcttggtgcccaccgaggtcaaaataagggcatcagattccctgggactggagttatgg 304
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 tgcttcgtgcccacggaggtcaaaataagggcatcagattccctgggactggagttatgg 91

                             
Query: 305 atgtttgtaaggcatgac 322
           ||||||||||| ||||||
Sbjct: 90  atgtttgtaagacatgac 73


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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