BAC Information

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BAC

Clone NameMSMg01-269N11
Chromosome8 (Build37)
Map Location 15,658,695 - 15,658,939
singlet/doubletsinglet
Overlap geneEG665619
Upstream geneDlgap2, C030037F17Rik, Cln8, Arhgef10, 2900016B01Rik, 5830468F06Rik, Kbtbd11, BB014433, Myom2, EG665599, EG234097
Downstream geneLOC634008, Csmd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269N11.T7 (MSMg01no269_n11.b1)MSMg01-269N11.TJ (MSMg01no269_n11.g1)
ACCAG409843AG409844
length732734
length of high quality
(start - end)
270 (42 - 311)287 (72 - 358)
definitionCHROMAT_FILE: MSMg01no269_n11.b1 PHD_FILE: MSMg01no269_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:23 2005CHROMAT_FILE: MSMg01no269_n11.g1 PHD_FILE: MSMg01no269_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCACAGTTTTCAAATTTCTGATAACTTCCCCACTCTAGATTAATTACTGG
AGCTTTCCATTTTTTAAAACAAAGATTTACTTTTCTGGATTTATGTGCAT
AAGTGTTTAACTGTATTTATGTCTGTGTACCACATACATACCTGGTATCT
AAAGAAGCCATAGGAGGACATTGGATCCCACGGAACTGGATGAATATATG
ACTGAGAGCCATCGATGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGNGNNNNTTTTTTTTTTNTTNNNTNNNTNNNTNNTTNNNNNNNN
NTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCNNTNNNTTTTTTTTTTTNT
TTNNTTNNTTNNNTTTTTAAAAAAAAAAAAAATAATNTTGTGGGGGGGGG
TATTTTATTGATTATAAATTTTTTATTAATTATAAATTAATTTTAAGTTA
AATTTATTTGAAGTTATGTAATTTTAATATAGAAATATTATTATAATTTT
TAAAATGGTTAACTTAATTTTATATTTTTATTAATTTAATATTTTACTTT
AAAATTGATAATAATGTATTGATTATTATATAGTCATTACTTCTTTTATA
TTATTTCATTTTTCTATTTTCTCTTTCTTCCCTACTTCTTTATCATATTT
TTTTTTTTTCTTACTTTTACTTTTGTATCTTT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTTTAAGTACTTATTTATTCATAACTCC
CCCCACCAAAATTAATGCTTCGATAATATGCATGTTGTACCCACATAATT
ATGTAAAATTTATTATCTCTGAAGGTCCTCATCTTTTTCCTTTCTATTCG
TTAAGTCTGAATGAATTATCTTTGTATGTGTGTCCTTTAAAACCTTCATT
TTAAAACTAATTTCTATATTCTACTTTTGACATTTTATGACAATATATAT
TACTCCCTTTATTCTTGAGTGAATATTCTTTTTACCCATACCTATCCTGT
ATCCTCTGTTTTTTTTCCACCCCACCCCTCTTATGAAAACTGCTCAACAT
TTTTAGTGACCACAACACCGTGACACAGTGTCAAAGGGCTGGGCACCTCT
TCCTTTACCCATTGTTTCATCTTCCTACAGCTATTTGGAATTTCATCTCA
ATTTACCTTTTATTTAGAGAAATATTCTTTGTACTTCCATTGTTTCTGAA
CAGGATTTTCAGAACTTTATAAACAATCACAATTAANATGGCCTTTCTTG
ATCTACATTTGTAAACAGTCCACTAACATAGAAAGTGGATAAGCCGGCTG
ATGTAGAAATATTCTTCCTGCCTTTCTTAGATAACACAGGTTGTGGAGGT
CTACATGGGATTAACAAAATGAAAGGATGATTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_n11.g1 MSMg01no269_n11.g1 CHROMAT_FILE:
MSMg01no269_n11.g1 PHD_FILE: MSMg01no269_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:23 2005
         (287 letters)



>mm_chr8_15658495_15659181
          Length = 687

 Score =  458 bits (237), Expect = e-133
 Identities = 243/245 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctttaagtacttatttattcataactccccccaccaaaattaatgcttcgataatatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctttaagtacttatttattcataactccccccaccaaaattaatgcttcgataatatgc 386

                                                                       
Query: 61  atgttgtacccacataattatgtaaaatttattatctctgaaggtcctcatctttttcct 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 atgttgtacccacataattatgtaaaatttattatctctgaaggtcctcacctttttcct 326

                                                                       
Query: 121 ttctattcgttaagtctgaatgaattatctttgtatgtgtgtcctttaaaaccttcattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttctattcgttaagtctgaatgaattatctttgtatgtgtgtcctttaaaaccttcattt 266

                                                                       
Query: 181 taaaactaatttctatattctacttttgacattttatgacaatatatattactcccttta 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 265 taaaactaatttctatattctacttttgacattttatgacaatatatattactctcttta 206

                
Query: 241 ttctt 245
           |||||
Sbjct: 205 ttctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)