BAC Information

Click to search

BAC

Clone NameMSMg01-269N24
Chromosome8 (Build37)
Map Location 87,029,337 - 87,029,652
singlet/doubletsinglet
Overlap geneCacna1a
Upstream geneLOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130
Downstream geneIer2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik, Gpt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269N24.T7 (MSMg01no269_n24.b1)MSMg01-269N24.TJ (MSMg01no269_n24.g1)
ACCAG409868AG409869
length731730
length of high quality
(start - end)		320 (43 - 362)292 (74 - 365)
definitionCHROMAT_FILE: MSMg01no269_n24.b1 PHD_FILE: MSMg01no269_n24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:25 2005CHROMAT_FILE: MSMg01no269_n24.g1 PHD_FILE: MSMg01no269_n24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTAACCTTAACTGCAGAATCGCACACTACATGCACTGATCCATTTTC
ATTGCTATGATCAAACACTCGAGGTTGAGCAGTTTCTAAAGGCAACAGAT
TCTTTGGTTCTGAGTTTGTATACCAAGCTGAGCTCTGGCAAGGGCCCCCA
GAACTGCTGCACACAGTTGGTTGGCATACTAGGGTATGACTGAGGAGAGG
TTATATGGAGATAGCAGACAAGAGAAATCCCTGGTCTTGCTGTTTTATAC
AGCCCTCTTGGAAAAGTTAAGGAGTGTCCCATGAGAACTGTGACCTCCCA
CTAGGCTCTGCTTTTTTTATAGCCCCTCACCACCACCTATTGTCCCTAAT
GTACGCTGACTTGGATGCCGCGGGATAACAAGAAGTGTGGGCATCCCATT
TCTTTGGGTGTTTCTGTGTGTATTGGAGCCCTTCGGTTCCTTAAGGCTCT
GCCAAATGTCTATGAATATAGTTGTCCCTTTCTTTCTCTCTTCTTTCTCT
GGGGTGTGTGTGTTTGAGACAGGGTCTCACTCTGCCATTCATGCCTGCTT
TGAACTCCACTAGTACTACATTCAAACCTGTCCCTGTCATTGAGAGCTTC
CCTCTACACTGTGTCCCCTATAGATCCTAGCCCCTCTTGATGCTAGCCTC
TGTGTANAAGGTATACCCCGCCTGCCTGACT

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTATATAGATCAAGCTGGCCTTGACCT
CACAGAAATCAGGCAACCTTGGCAGCTTTTAAGTTGGCTACTGCTCTCAA
TTCTGAAGTCCTTTTGTTTTGTATTTGAAGTATGGTGTCATGTGGCCCAG
CGTGGCCTCAAATTCACTATGTAGCTGAGGATGAAATTCAACTTCTTTTC
TTCTTTCTCACTGCCTCCGCTTCCTAAGTGATGTGTTTTATAAAGTTAAG
GCTATGTTTTGTAGAGCACGGTATGGTGTGGTGGGAGGGGGTGCCTCAGT
GGGCCCATGCTATTTCTTTTTATCCCCCCACCACCGTACTAGCTTTAGGG
GCATGGGAAGCAGGGCCACCAACGGAATAAAGAAAAGAAAGAGAGGGGAC
AGAGGAGAGAGACAGAGAGAGACAGAGGTATTCTCCAGAAACACGTGGAG
AGAGGGGGGAGAGAGAAAAGGGGTAGAGAGTCAGAGAGGGAGAGGACAAC
CAATCCCTTTTATAGCAAGCCAGGCCTACCTGGCTGTTGCTAGGTAACAG
TTGGTCGGAACATAAAAGGAATGTCAGCTCCTGTGAACTATAACTTGCAT
ACTAAGTAAACCCCTTAATCTTTGACCTGTTCGGCTCCCCTTCATTTTAT
TTTAATCCCCTTATTTATCCCAGTACTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_n24.b1 MSMg01no269_n24.b1 CHROMAT_FILE:
MSMg01no269_n24.b1 PHD_FILE: MSMg01no269_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:25 2005
         (320 letters)



>mm_chr8_87029133_87029852
          Length = 720

 Score =  611 bits (316), Expect = e-179
 Identities = 316/316 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctaaccttaactgcagaatcgcacactacatgcactgatccattttcattgct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctaaccttaactgcagaatcgcacactacatgcactgatccattttcattgct 264

                                                                       
Query: 65  atgatcaaacactcgaggttgagcagtttctaaaggcaacagattctttggttctgagtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgatcaaacactcgaggttgagcagtttctaaaggcaacagattctttggttctgagtt 324

                                                                       
Query: 125 tgtataccaagctgagctctggcaagggcccccagaactgctgcacacagttggttggca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtataccaagctgagctctggcaagggcccccagaactgctgcacacagttggttggca 384

                                                                       
Query: 185 tactagggtatgactgaggagaggttatatggagatagcagacaagagaaatccctggtc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tactagggtatgactgaggagaggttatatggagatagcagacaagagaaatccctggtc 444

                                                                       
Query: 245 ttgctgttttatacagccctcttggaaaagttaaggagtgtcccatgagaactgtgacct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgctgttttatacagccctcttggaaaagttaaggagtgtcccatgagaactgtgacct 504

                           
Query: 305 cccactaggctctgct 320
           ||||||||||||||||
Sbjct: 505 cccactaggctctgct 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |