BAC Information

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BAC

Clone NameMSMg01-269P09
Chromosome8 (Build37)
Map Location 66,067,918 - 66,068,218
singlet/doubletsinglet
Overlap genenone
Upstream geneSpock3
Downstream geneLOC384831, EG244495, Tll1, LOC100040989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269P09.T7 (MSMg01no269_p09.b1)MSMg01-269P09.TJ (MSMg01no269_p09.g1)
ACCAG409932AG409933
length732729
length of high quality
(start - end)
301 (432 - 732)243 (74 - 316)
definitionCHROMAT_FILE: MSMg01no269_p09.b1 PHD_FILE: MSMg01no269_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:31 2005CHROMAT_FILE: MSMg01no269_p09.g1 PHD_FILE: MSMg01no269_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTATAAATATTACTCTTGTGCAATTAGATAGACAGTTCTGCCTTCATAGA
TCATTTAAAGGTCTTTCTAACCATCCCTTCAGGCTTTAGGGGCAGGTGTG
ATTCTTTGAGAATAGTTTTTAAAAACTTATATTTTAGAATTAGGCATGCT
AAATATCCCTTATCATCACCATTTGCTAATTATCTTTTTTTTTAAGCAAA
GTTAACCTAAGTAAATCCAAGACTTCTCAAACACAAAATGAGAGTGATGT
AGTAACCACTTAATAATTGTTTTGAGTTCACTCACAACCTACTACTGAAA
ATCATTTTATTTTTGTTACCCACCCCCCCTCTAAAATGATTAATCTGGGA
AGCAATCAGTCTCATTTATATTTCCAACACACAAGTTTTCTACACCTCTA
GATTAAGTGAAAGATATATTTTTATTTTCAAAGTTAAGTATGACTCTATG
TTGACATATGCTTTGATTAGCCATTGGTAAATGTCTTAGTCACTATTCTT
TCACTGCTAAGGGACATCATGACCAAAAGAACTTATAAAAGGAAGCATTT
AATTAGGGCCTTGCTTAAAGTTTCAGAGGGTAAATTCCTGATCATCATGG
TGGGAAGTGTGAGGGCATCAGTCAGGGAAGGCCATTGAGCAGTAGCTGAG
AAAAAGGAGAGAGAGGAGAGGGAGGAAGATAG
TTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGAAGATCTTGGCTGTAAAGAAGAAG
AAAGAAATCAGAAAGATCAATAAAGCAGATAAATTGTATCACTGACCCCA
CACATGGGAACAGGTCTGATATTAGTTGAGCCAATGAAATTGTTACCATC
AGAATCTCAGCTATTCATAGCCAATAAATATTAATGGCCGTAGAATCCTT
AAGAAATATCATGCCAACATGTGTCGTCACCTGAGTTTTTGATCTTAGGC
ACTCTGATTGGTGTAAGGTGTAATCTCAGAGTCATTTCTCTGGTCACTAA
GGACTTGGAGTCANCTCCAATTTCCCTGCCGTGAATTCTTGGTTTAGTTC
TATACCCCATTTTTTAAATTGAAAATACATAATTTTTTTGTGGTTAGCTT
CTTGAGTTCTTTATATATTTTGGATATTAGCCCTCTATCAGATGTGAAGA
TTTTTTTCCCAATATGCTAATTTGTCTTATCAACTGTGTTCTTTACCTTA
CAGAAGCTTTCCAGTTTCATGAGGTCCCATTTATCAATTCTTGATGTTAG
AGCATGAGCCATTGGAGTTCTGTTTAGTAAATTTCCCCTGTGCTAATGAG
TTCAAAGTTCTTTCTCACTTTCTCTTCTATTAGATTCAGAGTATCTGGTT
TTAAGTTGAGGTCCTTGATCTACTTGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_p09.b1 MSMg01no269_p09.b1 CHROMAT_FILE:
MSMg01no269_p09.b1 PHD_FILE: MSMg01no269_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:31 2005
         (301 letters)



>mm_chr8_66067718_66068418
          Length = 701

 Score =  551 bits (285), Expect = e-161
 Identities = 297/301 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagttttctacacctctagattaagtgaaagatatatttttattttcaaagttaagtat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 caagttttctacacctctagattaagtgaaagatatatttttattttcaaagttaaatat 260

                                                                       
Query: 61  gactctatgttgacatatgctttgattagccattggtaaatgtcttagtcactattcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactctatgttgacatatgctttgattagccattggtaaatgtcttagtcactattcttt 320

                                                                       
Query: 121 cactgctaagggacatcatgaccaaaagaacttataaaaggaagcatttaattagggcct 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactgctaagggacaccatgaccaaaagaacttataaaaggaagcatttaattagggcct 380

                                                                       
Query: 181 tgcttaaagtttcagagggtaaattcctgatcatcatggtgggaagtgtgagggcatcag 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 tgcttaaagtttcagagggtaaattcctgatcatcatggtgggaagagtgagggcatcag 440

                                                                       
Query: 241 tcagggaaggccattgagcagtagctgagaaaaaggagagagaggagagggaggaagata 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagggaaggctattgagcagtagctgagaaaaaggagagagaggagagggaggaagata 500

            
Query: 301 g 301
           |
Sbjct: 501 g 501


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)