BAC Information

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BAC

Clone NameMSMg01-270I18
Chromosome8 (Build37)
Map Location 50,092,348 - 50,092,968
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040113, Dctd, Odz3, 2900073C17Rik
Downstream geneLOC100039866, 4930555F03Rik, LOC100039919
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270I18.T7 (MSMg01no270_i18.b1)MSMg01-270I18.TJ (MSMg01no270_i18.g1)
ACCAG410353AG410354
length702755
length of high quality
(start - end)
327 (47 - 373)624 (121 - 744)
definitionCHROMAT_FILE: MSMg01no270_i18.b1 PHD_FILE: MSMg01no270_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:13 2005CHROMAT_FILE: MSMg01no270_i18.g1 PHD_FILE: MSMg01no270_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTTAGCTCTAAGACACATTTTTAAATGGGGTTATTTGATT
TTCTGGAGTTCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCT
CTATCTGATTTAGGATAGGTAAAGACCCTTTCCCAATCTGTTGGTGGCCT
TTCGTCTTATTGACAGTGTCTTTTGCCTTACATAAGATTTGCAGTTTCAT
GAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTC
TATTCAGGAATTTTTCCCCTGTGCCAATATCTTTGAGGCTTCTCTCCACT
TTCCTTCTATAAGTTTCAGTGTCTCTGGCTTTATGTGGAGCTCCTTGATC
CACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCACAA
TCTTCTACATGATAACCACCAGTTTTGCCAGCACCATATTTTGAAAATGC
TGTCTTTCTTCCACTGGATGGATTAGTAGGATTGCTTCCAGCTTCTCACC
ATTTACTTTGATGTTGGCTACTGGTTTGCTGTAGATTGCTTTTATCATGT
TTAGGTATGGGCCTTGAATTTCTGATCTTTCCAAGACTTTTATCATGAAT
GGGTGTTGGATTTTGTCAAATGCTTTCTCCGCATCTAACGAGATGATCAT
GT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGTGTTTTGGGGGTGGGGAAGAGGAAGAGCCT
GATTGATTTTTTGATCACCCGGCTGGAAAGGTGTGATGCTCCTGTCCCGT
CCAGACAATGAATGACGACCAGAAAGAACACGGAGGAGCTTTCCCTCACC
CAGAATGTACATGCAAACACTTGCTCAAGCTCAAATCCCCTGCCTGATGC
ACACAGACGAGACTAGCTCCCAGTGACGAGATAGGGTTGCTTACTGCAGA
TTGGAGCCCCGAAAGCTAAATCTACCACTCTGAAATCCTGTGTCTACACA
TCACTTTTGCTGAAGTGGGAGGAAAAGCCCGTGTGGCTACCACCTAAGGT
GAGATGTGCTTGTGATTTCTGAAACCCTGCAGCCAAAGGTCTTAATCAGT
CTATCCCCAACCCAAAAGAATATATCATGGCCATTCCTTCCTGAGGGATT
TCAGGAGAGATCTCAGAAAAAGAGAAAAATCCAAAGATCACGGCACTAGT
CTGAATCAATTCACAGAACATTTCTGGGGAGGTCAGCTCTTCTCTAGTTT
TCTTGGATTTAGTGACTTTTTCTTCCATGGAGTATCANATAGTCATCAAC
CATAACAGAAGAGAGAGCTGGGTACTTAGCCTTGACCCACGGTCTTTTAG
GGGTCACCTATGAGTGCTAACCACCCCAAATTAATTACTTATGAGACACA
AAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_i18.g1 MSMg01no270_i18.g1 CHROMAT_FILE:
MSMg01no270_i18.g1 PHD_FILE: MSMg01no270_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:13 2005
         (624 letters)



>mm_chr8_50092145_50093168
          Length = 1024

 Score = 1149 bits (594), Expect = 0.0
 Identities = 614/621 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   tggaaaggtgtgatgctcctgtcccgtccagacaatgaatgacgaccagaaagaacacgg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tggaaaggtgtgatgctcctgtcccgtccagacaatgaatgacgaccagaaagaacacgg 263

                                                                       
Query: 64  aggagctttccctcacccagaatgtacatgcaaacacttgctcaagctcaaatcccctgc 123
            ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 264 gggagctttccctcacccagaatgtacatgcaaatacttgctcaagctcaaatcccctgc 323

                                                                       
Query: 124 ctgatgcacacagacgagactagctcccagtgacgagatagggttgcttactgcagattg 183
           |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 324 ctgatgcacacagatgagactagctcccagtgatgagatagggttgcttactgcagattg 383

                                                                       
Query: 184 gagccccgaaagctaaatctaccactctgaaatcctgtgtctacacatcacttttgctga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gagccccgaaagctaaatctaccactctgaaatcctgtgtctacacatcacttttgctga 443

                                                                       
Query: 244 agtgggaggaaaagcccgtgtggctaccacctaaggtgagatgtgcttgtgatttctgaa 303
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agtgggaggaaaagcctgtgtggctaccacctaaggtgagatgtgcttgtgatttctgaa 503

                                                                       
Query: 304 accctgcagccaaaggtcttaatcagtctatccccaacccaaaagaatatatcatggcca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 accctgcagccaaaggtcttaatcagtctatccccaacccaaaagaatatatcatggcca 563

                                                                       
Query: 364 ttccttcctgagggatttcaggagagatctcagaaaaagagaaaaatccaaagatcacgg 423
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atccttcctgagggatttcaggagagatctcagaaaaagagaaaaatccaaagatcacgg 623

                                                                       
Query: 424 cactagtctgaatcaattcacagaacatttctggggaggtcagctcttctctagttttct 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cactagtctgaatcaattcacagaacatttctggggaggtcagctcttctctagttttct 683

                                                                       
Query: 484 tggatttagtgactttttcttccatggagtatcanatagtcatcaaccataacagaagag 543
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 684 tggatttagtgactttttcttccatggagtatcaaatagtcatcaaccataacagaagag 743

                                                                       
Query: 544 agagctgggtacttagccttgacccacggtcttttaggggtcacctatgagtgctaacca 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agagctgggtacttagccttgacccacggtcttttaggggtcacctatgagtgctaacca 803

                                
Query: 604 ccccaaattaattacttatga 624
           |||||||||||||||||||||
Sbjct: 804 ccccaaattaattacttatga 824


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)