BAC Information

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BAC

Clone NameMSMg01-270P08
Chromosome8 (Build37)
Map Location 102,006,607 - 102,147,506
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh8, A330008L17Rik
Downstream geneLOC667531, LOC100042069, LOC436054, LOC100042078, LOC100042086, LOC100042092
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270P08.T7 (MSMg01no270_p08.b1)MSMg01-270P08.TJ (MSMg01no270_p08.g1)
ACCAG410647AG410648
length732717
length of high quality
(start - end)		628 (40 - 667)638 (80 - 717)
definitionCHROMAT_FILE: MSMg01no270_p08.b1 PHD_FILE: MSMg01no270_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:44 2005CHROMAT_FILE: MSMg01no270_p08.g1 PHD_FILE: MSMg01no270_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,147,044 - 102,147,506)(102,006,607 - 102,007,244)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
CTCTTGCACCTGCGTGCAAGGCTTGTTTACTAGTTAGGCACAGCAGAGGC
CTGCGCCATCTTATAATGGCGATTGCTCGCGGCACACACGGCTCTCCTCA
GAGATTACTGGCGGCACACATACGATTGCTCGCAGCACATACCGGCTCTC
CACATAGAATGTGTGTTCCTTGAATGCAGAAGGCTCTAAATTCATTCCCC
ATATGTAGAGGGTGTAGTAGAGAACACTTCTAAGGCCAATCTCAGCTACA
CACATTAGTCTAGACTGGCCTGGGCTAGAGACTTATTATCAAAAATATAT
AATAATAATTTTTAAAAGATCATTGCCATTAACGACCATTAAATTATTTG
ATTTTATAATGAACCTCTCCCCTACATTGACTAAATGTAGAACATTAGAA
ATAAACTAGAAAATGGTTGTCTGATCACTGAAGATATTTACACTGGATGG
GGGACAAAGTTTGTTTCACTCACCTCCCAGTGCTTAATTGGATTGATGAA
ATTCATGCCTACTTCAGGTGAAAAAAATTTTTGAATGAGCTGAAAATTAG
ATTTACAAGGATAAAGTGAATCTTTTAGTCTCACATCCAAGCACTGGGAG
AAGAAAAAATACGTTCTTTCAAATGTCCAAGTCTAGTTGTGCTTTCTCTT
AGCACACTTTAAAATTAATGTTAAATTCTAAG

NTCCGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTGACTTCTCAGTCATCTT
GTCAGACAGATTTCCCCTTACCTGTTTCCTTACAATACTTTGTACTTATT
TATTTCTGAACATTGAATCATGAAGACCTGAATGGATTGTGAGAGGGATG
CTCAAATAACCACAGTTTCAAGAAAACACAAAATTTATTTGGTTTTCCTA
TATCAGGTTAGAGAATGACAGGGGCACCAGGATCCTTGTCCCAGTCCACT
GCCTTTGAGTTGATAATGTTATAATTCAATAGCAAAACATATATGGTGCT
TGATGAAACACCCATTATTGCTGCATTCCAGAAAGTAGTTAAGAGTAAAG
TACTTAGAAGTCATATTTCTTTGCATGGGGACAGTTGGTGAAAAGTGTGT
TTAAAACTGCATTTCTATTTAAGTTAATTGAAAGTGGTTACGTGGCCATA
TGTCACTTCTTTGCTAAGAGTACTAAAGCAAAATACCTTAGCTTAAATAA
CTTGTGATTCTAGTATTGTCTGGGTCCAGGTATGCCCACAAATCAAAGAT
GTCAGAAGGGCAGAAAAAGGAGAACGGTCTCTTCATCTACTCAGACTTAA
AGAAAGTTTTCAAAGAGACAAACCGGGATAGCATATGATGTTTAGTGTCT
TCTATAAAAGTTTTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_p08.b1 MSMg01no270_p08.b1 CHROMAT_FILE:
MSMg01no270_p08.b1 PHD_FILE: MSMg01no270_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:44 2005
         (628 letters)



>mm_chr8_102147010_102148037
          Length = 1028

 Score =  880 bits (455), Expect = 0.0
 Identities = 461/463 (99%)
 Strand = Plus / Minus

                                                                       
Query: 166 tagaatgtgtgttccttgaatgcagaaggctctaaattcattccccatatgtagagggtg 225
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 497 tagaatgtgtgttccttgaatgcagaaggctctaaattcattccccatatgtagagcgtg 438

                                                                       
Query: 226 tagtagagaacacttctaaggccaatctcagctacacacattagtctagactggcctggg 285
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tagtagagaacacttctaaggccaatctcagctacacacattagtctagactggcctggg 378

                                                                       
Query: 286 ctagagacttattatcaaaaatatataataataatttttaaaagatcattgccattaacg 345
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ctagagacttattatcaaaaatatataataataatttttaaaagatcattgccattaacg 318

                                                                       
Query: 346 accattaaattatttgattttataatgaacctctcccctacattgactaaatgtagaaca 405
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 accattaaattatttgattttataatgaacctctcccctacattgactaaatgtagaaca 258

                                                                       
Query: 406 ttagaaataaactagaaaatggttgtctgatcactgaagatatttacactggatggggga 465
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttagaaataaactagaaaatggttgtctgatcactgaagatatttacactggatggggga 198

                                                                       
Query: 466 caaagtttgtttcactcacctcccagtgcttaattggattgatgaaattcatgcctactt 525
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 caaagtttgtttcactcacctcccagtgcttaattggattgatgaaattcatgcctactt 138

                                                                       
Query: 526 caggtgaaaaaaatttttgaatgagctgaaaattagatttacaaggataaagtgaatctt 585
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 caggtgaaaaaaatttttgaatgagctgaaaattagatttacaaggataaagtgaatctt 78

                                                      
Query: 586 ttagtctcacatccaagcactgggagaagaaaaaatacgttct 628
           || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  ttggtctcacatccaagcactgggagaagaaaaaatacgttct 35


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no270_p08.g1 MSMg01no270_p08.g1 CHROMAT_FILE:
MSMg01no270_p08.g1 PHD_FILE: MSMg01no270_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:44 2005
         (638 letters)



>mm_chr8_102006407_102007444
          Length = 1038

 Score = 1210 bits (626), Expect = 0.0
 Identities = 635/638 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctgacttctcagtcatcttgtcagacagatttccccttacctgtttccttacaatact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctgacttctcagtcatcttgtcagacagatttccccttacctgtttccttacaatact 260

                                                                       
Query: 61  ttgtacttatttatttctgaacattgaatcatgaagacctgaatggattgtgagagggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtacttatttatttctgaacattgaatcatgaagacctgaatggattgtgagagggat 320

                                                                       
Query: 121 gctcaaataaccacagtttcaagaaaacacaaaatttatttggttttcctatatcaggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 gctcaaataaccacagtttcaagaaaacacaaaatttatttggttttcctatatcgggtt 380

                                                                       
Query: 181 agagaatgacaggggcaccaggatccttgtcccagtccactgcctttgagttgataatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagaatgacaggggcaccaggatccttgtcccagtccactgcctttgagttgataatgt 440

                                                                       
Query: 241 tataattcaatagcaaaacatatatggtgcttgatgaaacacccattattgctgcattcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tataattcaatagcaaaacatatatggtgcttgatgaaacacccattattgctgcattcc 500

                                                                       
Query: 301 agaaagtagttaagagtaaagtacttagaagtcatatttctttgcatggggacagttggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaaagtagttaagagtaaagtacttagaagtcatatttctttgcatggggacagttggt 560

                                                                       
Query: 361 gaaaagtgtgtttaaaactgcatttctatttaagttaattgaaagtggttacgtggccat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaaagtgtgtttaaaactgcatttctatttaagttaattgaaagtggttacgtggccat 620

                                                                       
Query: 421 atgtcacttctttgctaagagtactaaagcaaaataccttagcttaaataacttgtgatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgtcacttctttgctaagagtactaaagcaaaataccttagcttaaataacttgtgatt 680

                                                                       
Query: 481 ctagtattgtctgggtccaggtatgcccacaaatcaaagatgtcagaagggcagaaaaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctagtattgtctgggtccaggtatgcccacaaatcaaagatgtcagaagggcagaaaaag 740

                                                                       
Query: 541 gagaacggtctcttcatctactcagacttaaagaaagttttcaaagagacaaaccgggat 600
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 741 gagaacggtctcttcttctactcagacttaaagaaagttttcaaagagacaaactgggat 800

                                                 
Query: 601 agcatatgatgtttagtgtcttctataaaagttttaat 638
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agcatatgatgtttagtgtcttctataaaagttttaat 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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