Query= MSMg01no271_c02.b1 MSMg01no271_c02.b1 CHROMAT_FILE:
MSMg01no271_c02.b1 PHD_FILE: MSMg01no271_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:56 2005
(308 letters)
>mm_chr8_129718814_129719520
Length = 707
Score = 511 bits (264), Expect = e-149
Identities = 292/302 (96%), Gaps = 3/302 (0%)
Strand = Plus / Minus
Query: 5 gaattcaccacactctgatgtccttggacggtaacccaggactctactctccctctacac 64
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 504 gaattcaccacactctgatgtccttggacggtgacccagcactctactctccctctacac 445
Query: 65 tgcgcacaaaaacaccatcacacagggcaagaacagtaagtgacagatgatcagggtagg 124
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 444 tgcgcacaaaaacaccatcacgcagggcaagaacattaagtgacagatgatcagggtagg 385
Query: 125 aagcaagataactcagtgggcatccagcaacaccaagctcaagcccaccttgcctctgga 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 384 aagcaagataactcagtgggcatccagcaacaccaagctcaagcccaccttgcccctgga 325
Query: 185 cagaacaatggctgctgccacgtagctatggacagcgaagggacaggtccca-tctnnct 243
||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||| ||
Sbjct: 324 cagaacaatggctgctgccacgtagctatggacagtgaagggacaggccccactct--ct 267
Query: 244 gttccaccgcctgcctcagacccggcacagcataccaactgcgagaacacagacaatgag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gttccaccgcctgcctcagacccggcacagcataccaactgcgagaacacagacaatgag 207
Query: 304 tg 305
||
Sbjct: 206 tg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 707
Length adjustment: 9
Effective length of query: 299
Effective length of database: 698
Effective search space: 208702
Effective search space used: 208702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no271_c02.g1 MSMg01no271_c02.g1 CHROMAT_FILE:
MSMg01no271_c02.g1 PHD_FILE: MSMg01no271_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:57 2005
(286 letters)
>mm_chr8_129616610_129617295
Length = 686
Score = 491 bits (254), Expect = e-143
Identities = 278/286 (97%)
Strand = Plus / Plus
Query: 1 tgggatttatctttctgacagggtgttctgtagagtcttcttggttgtgcgcccactctt 60
||||||||||||||||||||||||||||||||||| || ||||| |||| ||||||||||
Sbjct: 201 tgggatttatctttctgacagggtgttctgtagagcctccttggctgtgtgcccactctt 260
Query: 61 ggggttctcgggtctattgtttaaatcccagccaaccagattcatggctgtggatgctgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggttctcgggtctattgtttaaatcccagccaaccagattcatggctgtggatgctgt 320
Query: 121 tgctttgcatccctagacttcttggattctctcctgctgtccactctcgggggcactata 180
|||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||
Sbjct: 321 tgctttgcatccctagacttcttggattctttcctgccgtccactctcgcgggcactata 380
Query: 181 cctgcttctggaacttctctaagccctgcagggggtggggggcactgtgctcattgtcct 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgcgtctggaacttctctaagccctgcagggggtggggggcactgtgctcattgtcct 440
Query: 241 cagttcttgtcactgcagcctgggcttctctggtcagtgagcagca 286
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagttcttgtcactgcagcctgggcttctctggtcagtgagcagca 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
