BAC Information

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BAC

Clone NameMSMg01-271H18
Chromosome8 (Build37)
Map Location 19,187,073 - 19,187,651
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040466, Mcph1, Angpt2, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11
Downstream geneDefb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730, 4930467E23Rik, LOC100041567, LOC547150, LOC100040599, EG665822, 6820431F20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271H18.T7 (MSMg01no271_h18.b1)MSMg01-271H18.TJ (MSMg01no271_h18.g1)
ACCAG411023AG411024
length750741
length of high quality
(start - end)		323 (39 - 361)583 (71 - 653)
definitionCHROMAT_FILE: MSMg01no271_h18.b1 PHD_FILE: MSMg01no271_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:22 2005CHROMAT_FILE: MSMg01no271_h18.g1 PHD_FILE: MSMg01no271_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
TCTTTATAATGACTGAGTAGTAAGTACTCCATTGTGTAAATGTACCACAT
TTTCTGTATCCATTCCTCTGTTGAGGTACATCTGGGTTCTTTCCAGCTTC
TGGCTACTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTGC
TTACCGGTTGGAACATCTTCTGGATATATGCCCAGGAGAGGTATTGCAGG
ATCCTCCGGTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGATT
TCCAGAGTGGATGTACAAGCTTGCAATCCCACCAACAATGGAGGAGTGTT
TCTCTTTCTCCACATCCTCACCAGCATCTGCTGACACCTGAATTTTGATC
TTAGCCATTCTCACTGGTGTGAGGTGGAATCTCAAGGTTGTTTTGATTTG
CATTTCCCTGATGATTAAGGATGCTGAAAATTTTTTCAGGTGCTTCTCAG
CCATTCGGTATTCCTCAGGTGAGAATTCTTTGTTTAGCTCTGAGCCCCAT
TTTTTAATGGGGTTATTTGATTTTCTGGAGTCCACCCTCTTGAATTCTTT
ATATATATTGGATATTAGTCCCCTATCTGATTTTGGATAGGTAAAGAAAG
ATCTTTTCCCAATCTGCTGGTGGACTTTTTGACTTAATGACGGAGCCCTT
TGCCTTACAGATATTTTGCATTTTTATGACGTCCCATTTGTCCATTCTCA


CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACACAGACACACAGACACACAGACACACAC
ACACACACAGAGACACACAAATCTCCTGCCTTCTTTCGGTGGATGTGTAG
GCTGTTGGCAAAAATTGCTTCATGGTGAGGTCTCTTTGGGGCTGTGTTGT
GAAATGCAGCTGGATGACCTGATGAGAGAGAGCAAACCAAAAAGTACCAC
TGTGTATTCGTCCCCCCTGGGCCTGATCCGATCCCTGGTATATGTATAGA
AGAACGTCCTAGGGTCAACCTTATATAGAATTTTGTGTTTTATCCCTCAC
TTAATTTCAGTCTTAAGAGTCAGAAGTCAATCCCTGTGGAGTTGGATGTG
ATTTTGTAAACTATGACATATCTATATCACTGCTACGTTCAAATTCTTAA
ACTAGTTTGAACATGTTAAAAGTGGCTGTGACTGCATACAGAAAGACTGT
GCAAGATCATTCAGACAAAAATCTCAGCACACGTGAGTGAGGCAGTCACT
AAGGTCCACCTCAAGCGGACTTGCTATTGGCAGTTGATGGTTACCGGAAG
AGGCATGTCAGTTATCTTCAGAGTTGGAGCACCTTAGAGCAAGTCCGTGC
TCCAGTAGGTGGCCGTTTACCCATGCACATATTGGCAACATTGAGTGGAT
TCTGTGGTTTTTGAGAAAAAAAAAGAACATATGAATTATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_h18.g1 MSMg01no271_h18.g1 CHROMAT_FILE:
MSMg01no271_h18.g1 PHD_FILE: MSMg01no271_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:22 2005
         (583 letters)



>mm_chr8_19186869_19187851
          Length = 983

 Score = 1058 bits (547), Expect = 0.0
 Identities = 573/583 (98%), Gaps = 4/583 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acacagacacacagacacacagacacacacacacacacagagacacacaaatctcctgcc 60
           ||||||||||||  ||||||  ||||||||||||||||| ||||||||||||||||||||
Sbjct: 205 acacagacacac--acacac--acacacacacacacacacagacacacaaatctcctgcc 260

                                                                       
Query: 61  ttctttcggtggatgtgtaggctgttggcaaaaattgcttcatggtgaggtctctttggg 120
           |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 ttcttttggtggatgtgtaggctgttggtaaaaattgcttcatggtgaggtctctttggg 320

                                                                       
Query: 121 gctgtgttgtgaaatgcagctggatgacctgatgagagagagcaaaccaaaaagtaccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgtgttgtgaaatgcagctggatgacctgatgagagagagcaaaccaaaaagtaccac 380

                                                                       
Query: 181 tgtgtattcgtcccccctgggcctgatccgatccctggtatatgtatagaagaacgtcct 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 tgtgtattcgtcccccctgggcctgatccgatccctggtagatgtatagaagaacgtcct 440

                                                                       
Query: 241 agggtcaaccttatatagaattttgtgttttatccctcacttaatttcagtcttaagagt 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 agggtcaaccttatatagaatttggtgttttatccctcacttaatttcagtcttaagagt 500

                                                                       
Query: 301 cagaagtcaatccctgtggagttggatgtgattttgtaaactatgacatatctatatcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagaagtcaatccctgtggagttggatgtgattttgtaaactatgacatatctatatcac 560

                                                                       
Query: 361 tgctacgttcaaattcttaaactagtttgaacatgttaaaagtggctgtgactgcataca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgctacgttcaaattcttaaactagtttgaacatgttaaaagtggctgtgactgcataca 620

                                                                       
Query: 421 gaaagactgtgcaagatcattcagacaaaaatctcagcacacgtgagtgaggcagtcact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaagactgtgcaagatcattcagacaaaaatctcagcacacgtgagtgaggcagtcact 680

                                                                       
Query: 481 aaggtccacctcaagcggacttgctattggcagttgatggttaccggaagaggcatgtca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaggtccacctcaagcggacttgctattggcagttgatggttaccggaagaggcatgtca 740

                                                      
Query: 541 gttatcttcagagttggagcaccttagagcaagtccgtgctcc 583
           ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 741 gttatcttcggagttggagcaccttagagcaagtccgtgctcc 783


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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