BAC Information

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BAC

Clone NameMSMg01-271N21
Chromosome8 (Build37)
Map Location 86,991,015 - 86,991,307
singlet/doubletsinglet
Overlap geneCacna1a
Upstream geneLOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130
Downstream geneIer2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271N21.T7 (MSMg01no271_n21.b1)MSMg01-271N21.TJ (MSMg01no271_n21.g1)
ACCAG411302AG411303
length774743
length of high quality
(start - end)		318 (39 - 356)294 (70 - 363)
definitionCHROMAT_FILE: MSMg01no271_n21.b1 PHD_FILE: MSMg01no271_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:50 2005CHROMAT_FILE: MSMg01no271_n21.g1 PHD_FILE: MSMg01no271_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
CCCACCGATTTCCATAGCAGCTGTACCAGTTTGCAATCCCCACACAGCCC
CCATCATTTATTGTCAGTTGCTCCTTTGTTCTTTTTACTCTGACTAGGAT
AAGATGAAATCTCAAAGTTGTTTTGATTTTCATTTTCCTAATTACTAGAG
ATGGTGAACATTTTTTTGAGATATTTCTAAGACATTTTTTCCTCTTCGTT
TGAGAACTCTCTATTTGGGTGTGTCTTAGTTACTGTTCTACTGCTGTGAA
GAGACACCATGGCCAAACCAACTCTTATAAAAGAGCATTTAATTGGGGAC
TTACAGTTCTTATTATTATCGCCCCCCACGCTGGGAAGGGAAGCACAGTA
GTAGACATGGCAGGATGGTGCTGGAGCAGGAACACATCCTGATCTGTAGA
CAGAGAGGGAGACACTGGGCTTGCCATGGGTTTTTGAAACATCAAAACTC
ACCCCCAGCTTCCTTCAACGAGGGCACACATACCTCTTAATCCTTCTAAT
CCTTTCAAATAGAGCCACTTCCTGGTGACTGAACATTCAAATATATGAGT
CTACTTGGGGAGGGGCATTCTTTTTTAATATCTTATTTATTTTTATTTTA
TGTGGTTTGTCTGCATGTATTATGTCTGTGTGAGGGTGTGAGATCTTGTA
GTTTAAGACAGGTGTGAGCTACCATGTGAGTGAAGGGATTTTGAACCTGG
GTCCTCTGAAATAGCAAGCAGTGC

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTTTCTTTCCCTTTTTTCATTCACATTTCT
TAAATGTCCATCCTGCATGTTTTTGTTTTAATCCTCAGAATTTCAATAAA
TGCCCCCAAAGCCAACAAATCTATGGTTAAGATACTTCCCACCAAACCTC
ACACAAGACAAAGGCAAAAAGCCCTGACTGTCCACAAGACCCAGTTGCTG
ACTGAACACTGCAGGCCTCTCAGGAATGGAAGACAGCCAGCTAATCAGCA
AAAGCTCATTAAAGCCACCACTTGTCTCAGTGCCCAATCCATCCCCAAGT
CCCTCTCTCTCCTTGTTGAACCCACCACTGAATCACCACTGCTGACAGGG
TAGAGGGCTGGCTCTGCGGGGTTTCTCCTGCACAGCTCAGCAGACAGAGC
CCCAGCAAGACCCAGGGATGGGATGGGAGCACTGGACCTGAGTTAAGAAA
AGTTACCAGACAACAAGGAAGCATGCTGATCAGATAAACAAGCAAGAAAA
ATAGGGAGGTGGGCTGTACAGATGGGAAAGAAAATGAGAACGAGGCAGGT
ACAGGGAGTAGGAGGAGAAGCATCTGAGGCTGGGCAGTAGGGAGGTCCCC
AAATCAGAAAGAAATACAGATTAGCAAAACATGTGCACACACACATGCTC
ACAGAGTCAAAGACTACAGACCAAAGATGCATTCACCCACACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_n21.g1 MSMg01no271_n21.g1 CHROMAT_FILE:
MSMg01no271_n21.g1 PHD_FILE: MSMg01no271_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:51 2005
         (294 letters)



>mm_chr8_86990815_86991508
          Length = 694

 Score =  567 bits (293), Expect = e-166
 Identities = 293/293 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctttctttcccttttttcattcacatttcttaaatgtccatcctgcatgtttttgtttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tctttctttcccttttttcattcacatttcttaaatgtccatcctgcatgtttttgtttt 434

                                                                       
Query: 61  aatcctcagaatttcaataaatgcccccaaagccaacaaatctatggttaagatacttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 aatcctcagaatttcaataaatgcccccaaagccaacaaatctatggttaagatacttcc 374

                                                                       
Query: 121 caccaaacctcacacaagacaaaggcaaaaagccctgactgtccacaagacccagttgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 caccaaacctcacacaagacaaaggcaaaaagccctgactgtccacaagacccagttgct 314

                                                                       
Query: 181 gactgaacactgcaggcctctcaggaatggaagacagccagctaatcagcaaaagctcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gactgaacactgcaggcctctcaggaatggaagacagccagctaatcagcaaaagctcat 254

                                                                
Query: 241 taaagccaccacttgtctcagtgcccaatccatccccaagtccctctctctcc 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 taaagccaccacttgtctcagtgcccaatccatccccaagtccctctctctcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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