ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGTGTTGCATTAACAGATCAAAAAAAAAAGATTTATATTAAAAATATT
CAGTTGGAAGAGGAATAGAATTATTCAGCCCTAAGAACCAGTGCCAGGCT
TGAGAGATGGCTTGGAGGTTAGGAGCACTCGCTGCTCTTCCAGAGAACTG
GAACTCAGTTCTCAAGACCCACAGCAGACGGCGTACAAACTACAGCAACT
CAGACCTCTGGCATCCTCAAGCACTAGGGTGCATGAAACACATGCACACA
CACGTGTTTTGTAAGTCAGAATTATAACAATATTGTCATAAAGCACAGTG
AATACTGCCTAAGCCTGAGGTGCAGTCAAGGTGTTGGGCTGCATTCAATT
TTGGATTTCACAACAAAAGTAATAATACAAACTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTACATGACTGCAAGTACCCTCAAAGGTCAGAAAATGCTGA
AAACCTCTGGTCTTCTGCAAGAGCAACAAGTGTGTTTAACTGCTGAGTCA
TCTCTCAGCCCCTCCACCTGACCTTCTTTTAGGCAGGGTCACTCATGGAA
CCTGGAGCTCACTGATTGGCTAGGCTAGCTGGCCAATTGAGCGCCAGGAA
TTAGCTTGTCTCTGCCCGCCTCTTAGTACTCCAAGTCCTCCACTCCCAGC
TTTTACTTCAGCTAGAGCTCANATAGGTCCCTATGCTTGCGTGGCA

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTTTGTAGACCAGGCTGGCCTCGAACTC
AGAAATCCACCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGTAGTGCC
CCTTTTTAAGAGTTTCTATGGTCATGGTGTTTCTTCACAGCAATAAAACC
CTAACTAACACAAAAGGTGAGTCCCTATTGAAAACATCATGCACTTTAGA
CACAAGGCCTAGAGGCCACTGAGTTGGAAGTGACCTGAAAGCTTCCTTCC
TGAAGACTAAACTTCATGGTACTAGAAGACACCACGTGAGCACCCAAAGG
AAGAAAGTGATGATAGTCCTACCCATCTGTGATGCTTAGACACCATAACA
ACAACCAGCATGGCCAGATAACCCCAAGGGTTTGTGCATTCCTTGACAGT
AACCAACAGCTCTCTCACTGGACTTAAGAGGGAAGCCATGCCTAGTAATA
GAAACCTAGCCAACTACAGGGCTAGTTGTGGGAAAACTGCTAATTAAAGT
CAAAGTCTACTGTTGACCAGATAGCCTGCTGAGGTTCGGCGTGTAATGGG
GGACACCCCACTTTTAAAAAGATTAACTAATTAATTTATTTATTTATTTA
TTTATTTTGGCTTTTCGAGACAGGGTTTCTCTGTATAGCCCTAGTTGTCT
GGAACTCACCTTGTAAACCAGGCTGGTCTCGACCTN

Query= MSMg01no271_p02.b1 MSMg01no271_p02.b1 CHROMAT_FILE:
MSMg01no271_p02.b1 PHD_FILE: MSMg01no271_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:56 2005
         (700 letters)



>mm_chr8_48420708_48421807
          Length = 1100

 Score = 1272 bits (658), Expect = 0.0
 Identities = 693/719 (96%), Gaps = 22/719 (3%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgtgttgcattaacagatcaaaaaaaaaagatttatattaaaaatattcagtt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgtgttgcattaacagatcaaaaaaaaaagatttatattaaaaatattcagtt 263

                                                                       
Query: 64  ggaagaggaatagaattattcagccctaagaaccagtgccaggcttgagagatggcttgg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggaagaggaatagaattattcagccctaagaaccagtgccaggcttgagagatggcttgg 323

                                                                       
Query: 124 aggttaggagcactcgctgctcttccagagaactggaactcagttctcaagacccacagc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aggttaggagcactcgctgctcttccagagaactggaactcagttctcaagacccacagc 383

                                                                       
Query: 184 agacggcgtacaaactacagcaactcagacctctggcatcctcaagcactagggtgcatg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agacggcgtacaaactacagcaactcagacctctggcatcctcaagcactagggtgcatg 443

                                                                       
Query: 244 aaacacatgcacacacacgtgttttgtaagtcagaattataacaatattgtcataaagca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaacacatgcacacacacgtgttttgtaagtcagaattataacaatattgtcataaagca 503

                                                                       
Query: 304 cagtgaatactgcctaagcctgaggtgcagtcaaggtgttgggctgcattcaattttgga 363
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cagtgaatactgcttaagcctgaggtgcagtcaaggtgttgggctgcattcaattttgga 563

                                                                       
Query: 364 tttcacaacaaaagtaataatacaaactgtgtgtgtgtgtgtgtgtgtgtgtgtgt---- 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 564 tttcacaacaaaagtaataatacaaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 623

                                                                       
Query: 420 ------------------acatgactgcaagtaccctcaaaggtcagaaaatgctgaaaa 461
                             |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 624 gtgtgtgtgtgtgtgtgtacatgaatgcaagtaccctcaaaggtcagaaaatgctgaaaa 683

                                                                       
Query: 462 cctctggtcttctgcaagagcaacaagtgtgtttaactgctgagtcatctctcagcccct 521
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cctctggtcttctgcaagagcaacaagtgtgtttaactgctgagtcatctctcagcccct 743

                                                                       
Query: 522 ccacctgaccttcttttaggcagggtcactcatggaacctggagctcactgattggctag 581
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ccacctgaccttcttttaggcagggtcactcatggaacctggagctcactgattggctag 803

                                                                       
Query: 582 gctagctggccaattgagcgccaggaattagcttgtctctgcccgcctcttagtactcca 641
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gctagttggccaattgagcgccaggaattagcttgtctctgcccgcctcttagtactcca 863

                                                                      
Query: 642 agtcctccactcccagcttttacttcagctagagctcanataggtccctatgcttgcgt 700
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 864 agtcctccactcccagcttttacttcagctagagctcaaataggtccctatgcttgcgt 922


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space:   752100
Effective search space used:   752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)