BAC Information

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BAC

Clone NameMSMg01-272E15
Chromosome8 (Build37)
Map Location 72,040,669 - 72,040,984
singlet/doubletsinglet
Overlap geneEG665578
Upstream gene4732435N03Rik, Ints10, Lpl, LOC100041138, Slc18a1, Atp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561, LOC670593
Downstream geneLOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272E15.T7 (MSMg01no272_e15.b1)MSMg01-272E15.TJ (MSMg01no272_e15.g1)
ACCAG411614AG411615
length768770
length of high quality
(start - end)		321 (46 - 366)645 (77 - 721)
definitionCHROMAT_FILE: MSMg01no272_e15.b1 PHD_FILE: MSMg01no272_e15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:24 2005CHROMAT_FILE: MSMg01no272_e15.g1 PHD_FILE: MSMg01no272_e15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:24 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTGAATATTTCGCTCTGAAAGAGTTTGCTCTTACAATGCCACAT
GCTTTTTCCACATGGAATACATCTGCCTATGCTGAAATTTTCTGTTTAGT
AGACATGTATATCTGTTGTTTATGTTGAGCAATTATTTCCAAATAACAGT
TCTTTCTGTGATTTAAGACACATTTTAAAACTTTAATGTTATATGTAAAA
ACTTAATTTTATTTTTTTCTTGTTCATGTTTACATCTAGCTCAGTGACCC
CCTCCTGGTCACCCAGTCCCACAGTCTCTCCCTGCCCCTCCTCCACTTCA
CCTCTGAGCAGTTTGTTTCTCCCTGCATGTCCCAACCCTGGCACTTCGTC
TCTCTCTGAGGACACACCCCACANCTCAGCTAGAAGAATAAAACTGAGGT
AGGATGAACAGCTTTTTTTGATACCCCCATTCCAGTTGATTGGGACCCAT
GTGAAGACCTAGCTGCCCCTCTGCTACATAGGTGCTCAGAGATATCCGTC
CAACCCATGTTTGTTCTTTGTTTCATTGTTCCATCTCTGAGTGCCCTGAG
GGTTCATGTTATTTGATTCTGGTGGTTGGTCATTCTCTGGAGTTCCTATC
TTCTTCAGGCCTGGAATCCTTCCTTTTAAACTTCCATAATTGGCTACTGC
CAAACCCTCCTGAGCTTGCCCGATTTTGTCCTTAATTCCTTTCACCGGTG
CTTTTCTCTACTTTTTTC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCT
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGTTATATATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTACGCCCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATATAATTTC
CTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGNACACTATG
CCCCTCCTTAAAAGTGGGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_e15.b1 MSMg01no272_e15.b1 CHROMAT_FILE:
MSMg01no272_e15.b1 PHD_FILE: MSMg01no272_e15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:24 2005
         (321 letters)



>mm_chr8_72040569_72041289
          Length = 721

 Score =  538 bits (278), Expect = e-157
 Identities = 307/318 (96%), Gaps = 4/318 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtgaatatttcgctctgaaagagtttgctcttacaatgccacatgctttttcc 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gaattctgtgaatatttagctctgaaagagtttgctcttacaatgccacatgctttttcc 357

                                                                       
Query: 65  acatggaatacatctgcc--tatgctgaaattttctgtttagtagacatgtatatctgtt 122
           | |||||||||||||  |  ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 356 atatggaatacatct--ctttatgctgaaattttctgtttagtggacatgtatatctgtt 299

                                                                       
Query: 123 gtttatgttgagcaattatttccaaataacagttctttctgtgatttaagacacatttta 182
           ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 298 gtttatgttgagccattatttccaaataacagttctttctgtgatttaagatacatttca 239

                                                                       
Query: 183 aaactttaatgttatatgtaaaaacttaattttatttttttcttgttcatgtttacatct 242
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 aaactttaatgatatatgtaaaaacttaattttatttttttcttgttcatgtttacatct 179

                                                                       
Query: 243 agctcagtgaccccctcctggtcacccagtcccacagtctctccctgcccctcctccact 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 agctcagtgaccccctcctggtcacccagtcccacagtctctccctgcccctcctccact 119

                             
Query: 303 tcacctctgagcagtttg 320
           ||||||||||||||||||
Sbjct: 118 tcacctctgagcagtttg 101


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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