MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-272O13
Chromosome	8 (Build37)
Map Location	106,141,179 - 106,141,468
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Cdh11, EG667618, LOC100041368, 1600027J07Rik
Downstream gene	LOC100041397, LOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16
Link	Open Mouse BAC browser

Click to get alignment info.

name	Cdh11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12552 MGI:99217
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG667618 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:667618 MGI:3644565
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 21 mRNAs, 3210 ESTs, 8 Proteins

name	LOC100041368 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041368
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	1600027J07Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69794 MGI:1917044
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	LOC100041397 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041397
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins

name	LOC667656 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667656
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 3 Proteins pseudo : _no_value

name	Cdh5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12562 MGI:105057
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Bean (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:65115 MGI:1929597
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 13 ESTs, 1 Protein

name	Tk2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:57813 MGI:1913266
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cklf (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75458 MGI:1922708
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Cmtm2a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73381 MGI:2447160
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cmtm2b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75502 MGI:2447311
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cmtm3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68119 MGI:2447162
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cmtm4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:97487 MGI:2142888
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dync1li2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:234663 MGI:107738
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccdc79 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320022 MGI:2443187
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Appbp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:234664 MGI:2384561
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Car7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12354 MGI:103100
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC628007 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:628007
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 51 ESTs, 4 Proteins pseudo : _no_value

name	4833426J09Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:382051 MGI:1918878
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cdh16 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12556 MGI:106671
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cdh11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114687887 GeneID:12552 MGI:99217
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cadherin 11 transcript_id : NM_009866.4

name	EG667618 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149259054 GeneID:667618 MGI:3644565
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 21 mRNAs, 3210 ESTs, 8 Proteins product : predicted gene, EG667618 transcript_id : XM_991508.2

name	1600027J07Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149259009 GeneID:69794 MGI:1917044
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : RIKEN cDNA 1600027J07 gene transcript_id : XM_001476265.1

name	LOC100041397 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259011 GeneID:100041397
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins product : similar to retinitis pigmentosa GTPase regulator transcript_id : XM_001476323.1

name	Cdh5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254596 GeneID:12562 MGI:105057
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cadherin 5 transcript_id : NM_009868.3

name	Bean (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149259014 GeneID:65115 MGI:1929597
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 13 ESTs, 1 Protein product : brain expressed, associated with Nedd4, transcript variant 1 transcript_id : XM_486154.5

name	Tk2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:10835110 GeneID:57813 MGI:1913266
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thymidine kinase 2, mitochondrial transcript_id : NM_021028.2

name	Cklf (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142368069 GeneID:75458 MGI:1922708
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chemokine-like factor transcript_id : NM_029295.2

name	Cklf (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111074535 GeneID:75458 MGI:1922708
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chemokine-like factor transcript_id : NM_001037841.2

name	Cmtm2a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126157473 GeneID:73381 MGI:2447160
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CKLF-like MARVEL transmembrane domain containing 2A transcript_id : NM_027022.4

name	Cmtm2b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142366677 GeneID:75502 MGI:2447311
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CKLF-like MARVEL transmembrane domain containing 2B transcript_id : NM_028524.2

name	Cmtm3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892608 GeneID:68119 MGI:2447162
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CKLF-like MARVEL transmembrane domain containing 3 transcript_id : NM_024217.3

name	Cmtm4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130093 GeneID:97487 MGI:2142888
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CKLF-like MARVEL transmembrane domain containing 4 transcript_id : NM_153582.4

name	Dync1li2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:62945389 GeneID:234663 MGI:107738
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dynein, cytoplasmic 1 light intermediate chain 2 transcript_id : NM_001013380.1

name	Ccdc79 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142348021 GeneID:320022 MGI:2443187
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 79 transcript_id : NM_180958.2

name	Appbp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142369149 GeneID:234664 MGI:2384561
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : amyloid beta precursor protein binding protein 1 transcript_id : NM_144931.2

name	Car7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144227229 GeneID:12354 MGI:103100
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : carbonic anhydrase 7 transcript_id : NM_053070.2

name	4833426J09Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:66841377 GeneID:382051 MGI:1918878
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4833426J09 gene transcript_id : NM_001024606.1

name	Cdh16 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142376412 GeneID:12556 MGI:106671
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cadherin 16 transcript_id : NM_007663.2

name	Cdh11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114687888 CCDS:CCDS22571.1 GeneID:12552 MGI:99217
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0007156 - homophilic cell adhesion [Evidence IEA] codon_start : 1 note : OB-cadherin; osteoblast-cadherin product : cadherin 11 protein_id : NP_033996.4

name	EG667618 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94383772 GeneID:667618 MGI:3644565
definition	codon_start : 1 product : similar to Acidic ribosomal phosphoprotein P0 protein_id : XP_996602.1

name	1600027J07Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149259010 GeneID:69794 MGI:1917044
definition	codon_start : 1 product : hypothetical protein LOC69794 protein_id : XP_001476315.1

name	LOC100041397 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259012 GeneID:100041397
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476373.1

name	Cdh5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38490561 CCDS:CCDS22572.1 GeneID:12562 MGI:105057
definition	GO_component : GO:0005911 - intercellular junction [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005923 - tight junction [Evidence IDA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0001955 - blood vessel maturation [Evidence IMP]; GO:0007155 - cell adhesion [Evidence IEA]; GO:0016337 - cell-cell adhesion [Evidence IC]; GO:0007156 - homophilic cell adhesion [Evidence IEA]; GO:0008285 - negative regulation of cell proliferation [Evidence IGI] codon_start : 1 note : VE-cadherin; 7B4/cadherin-5 product : cadherin 5 protein_id : NP_033998.2

name	Bean (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149259015 GeneID:65115 MGI:1929597
definition	codon_start : 1 product : brain expressed, associated with Nedd4 isoform 1 protein_id : XP_486154.5

name	Tk2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10835111 CCDS:CCDS22573.1 GeneID:57813 MGI:1913266
definition	EC_number : 2.7.1.21 GO_component : GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO:0004797 - thymidine kinase activity [Evidence ISS] [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006260 - DNA replication [Evidence IEA]; GO:0006139 - nucleobase, nucleoside, nucleotide and nucleic acid metabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation function : phosphorylate pyrimidine nucleosides to their 5' monophosphate product : thymidine kinase 2, mitochondrial protein_id : NP_066356.2

name	Cklf (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83745101 GeneID:75458 MGI:1922708
definition	GO_component : GO:0005615 - extracellular space [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0019031 - viral envelope [Evidence IEA] GO_function : GO:0005125 - cytokine activity [Evidence IEA] GO_process : GO:0006935 - chemotaxis [Evidence IEA] codon_start : 1 note : isoform 4 is encoded by transcript variant 4; chemokine-like factor 2; chemokine-like factor 4; chemokine-like factor 6 product : chemokine-like factor isoform 4 protein_id : NP_001032930.1

name	Cklf (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312956 GeneID:75458 MGI:1922708
definition	GO_component : GO:0005615 - extracellular space [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0019031 - viral envelope [Evidence IEA] GO_function : GO:0005125 - cytokine activity [Evidence IEA] GO_process : GO:0006935 - chemotaxis [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; chemokine-like factor 2; chemokine-like factor 4; chemokine-like factor 6 product : chemokine-like factor isoform 1 protein_id : NP_083571.1

name	Cmtm2a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21729761 GeneID:73381 MGI:2447160
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005615 - extracellular space [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IPI] GO_function : GO:0005125 - cytokine activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003714 - transcription corepressor activity [Evidence IDA] GO_process : GO:0006935 - chemotaxis [Evidence IEA]; GO:0045892 - negative regulation of transcription, DNA-dependent [Evidence IDA] codon_start : 1 note : chemokine-like factor superfamily 2-1b product : chemokine-like factor super family 2A protein_id : NP_081298.1

name	Cmtm2b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21729765 CCDS:CCDS22576.1 GeneID:75502 MGI:2447311
definition	codon_start : 1 note : chemokine-like factor superfamily protein 2-2 product : chemokine-like factor super family 2B protein_id : NP_082800.1

name	Cmtm3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13195644 CCDS:CCDS22577.1 GeneID:68119 MGI:2447162
definition	GO_component : GO:0005615 - extracellular space [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005125 - cytokine activity [Evidence IEA] GO_process : GO:0006935 - chemotaxis [Evidence IEA] codon_start : 1 product : chemokine-like factor super family 3 protein_id : NP_077179.1

name	Cmtm4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27312023 CCDS:CCDS22578.1 GeneID:97487 MGI:2142888
definition	GO_component : GO:0005615 - extracellular space [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005125 - cytokine activity [Evidence IEA] GO_process : GO:0006935 - chemotaxis [Evidence IEA] codon_start : 1 product : chemokine-like factor super family 4 protein_id : NP_705810.2

name	Dync1li2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:62945390 CCDS:CCDS22579.1 GeneID:234663 MGI:107738
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005868 - cytoplasmic dynein complex [Evidence IEA]; GO:0030286 - dynein complex [Evidence IEA]; GO:0005874 - microtubule [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003777 - microtubule motor activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0003774 - motor activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0007018 - microtubule-based movement [Evidence IEA] codon_start : 1 exception : mismatches in translation note : dynein, cytoplasmic, light intermediate chain 2 product : dynein, cytoplasmic, light intermediate polypeptide 2 protein_id : NP_001013398.1

name	Ccdc79 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30725843 CCDS:CCDS22580.1 GeneID:320022 MGI:2443187
definition	GO_function : GO:0005488 - binding [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA] GO_process : GO:0045449 - regulation of transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation product : coiled-coil domain containing 79 protein_id : NP_851289.1

name	Appbp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450341 GeneID:234664 MGI:2384561
definition	GO_function : GO:0016874 - ligase activity [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0007049 - cell cycle [Evidence IEA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 note : amyloid beta precursor protein binding protein 1, 59kDa product : amyloid beta precursor protein binding protein 1 protein_id : NP_659180.1

name	Car7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28269695 CCDS:CCDS22581.1 GeneID:12354 MGI:103100
definition	GO_function : GO:0046872 - metal ion binding [Evidence IEA] codon_start : 1 note : carbonic anhydrase VII product : carbonic anhydrase 7 protein_id : NP_444300.1

name	4833426J09Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:66841378 CCDS:CCDS22582.1 GeneID:382051 MGI:1918878
definition	GO_component : GO:0008287 - protein serine/threonine phosphatase complex [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO:0004722 - protein serine/threonine phosphatase activity [Evidence IEA] GO_process : GO:0006470 - protein amino acid dephosphorylation [Evidence IEA] codon_start : 1 product : pyruvate dehydrogenase phosphatase isoenzyme 2 protein_id : NP_001019777.1

name	Cdh16 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680900 CCDS:CCDS22583.1 GeneID:12556 MGI:106671
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0007156 - homophilic cell adhesion [Evidence IEA] codon_start : 1 note : KSP-cadherin product : cadherin 16 protein_id : NP_031689.1

name	LOC100041368 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041368
definition	number : 4 pseudo : _no_value

name	LOC100041368 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041368
definition	number : 3 pseudo : _no_value

name	LOC100041368 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041368
definition	number : 2 pseudo : _no_value

name	LOC100041368 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041368
definition	number : 1 pseudo : _no_value

name	LOC667656 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149259013 GeneID:667656
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 3 Proteins product : similar to ribosomal protein S7 pseudo : _no_value transcript_id : XR_032680.1

name	LOC628007 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149259055 GeneID:628007
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 51 ESTs, 4 Proteins product : similar to guanine nucleotide binding protein (G protein), gamma 5 subunit pseudo : _no_value transcript_id : XR_033668.1

clone name	MSMg01-100I04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128I05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-346A04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-049N06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-163C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-154C22
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-371J15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-451N09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-047H05
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-274A08
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-135N17
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-454F07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-206K20
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-117H24
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-208F15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-446F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-411P01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-447I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-159K06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-313D22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-218C06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438L23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-522K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-343F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538L03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304E19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-442I09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-106P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-511K16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-197I23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-341E20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-455M16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262L23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-504P20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-390A03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-348L11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-338K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-178K11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-088N12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-539G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-515F06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-059A10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-337B15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-275D16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-350J09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-424L09
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-434D21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-434L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-437N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-464F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-112H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-272O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-120E03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-178B03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-366K08
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-422J18
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-076F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079H12
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-412O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-399E18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-339M14
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-353B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-503G19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-328D24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-217E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-404K16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-542H03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125H12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-138F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410C15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237B05
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-127N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-348I01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079G03
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-408A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-471N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-439E24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347G08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-548A07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-101G05
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-413D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-426A03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-478H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340H05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-323N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-215P24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079O22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-206O13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-178F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112G08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-197P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097E16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-298L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045J07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062A19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-073C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076G19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-154H14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-255L06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-159B13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-202C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019K03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-130O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050D15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027C21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-015C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264E17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-233N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310E23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-294K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126D21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182H09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-236F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047O13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-236P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-186H11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-051O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089K11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-073C18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-141C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147O04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-080M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180I11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-274A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280N16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-179L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169M15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-170B21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-093F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186E05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-277O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253D02
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-272O13.T7 (MSMg01no272_o13.b1)	MSMg01-272O13.TJ (MSMg01no272_o13.g1)
ACC	AG412060	AG412061
length	768	769
length of high quality (start - end)	319 (45 - 363)	294 (388 - 681)
definition	CHROMAT_FILE: MSMg01no272_o13.b1 PHD_FILE: MSMg01no272_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:10 2005	CHROMAT_FILE: MSMg01no272_o13.g1 PHD_FILE: MSMg01no272_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:10 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA ATTCTGTATCATGAACTACTCTTTCCTGTCTGGATGGGTGTTATATCCAA ATCCTCCTTCTGGGGGCTGAGGACATACTTCAGGTGGTAGAGTTCTCAAC TAGCATGTGTAAGCCTTGGGTTTAATGCTTAACAGCACATACAGTTGAGC ATGGTAGTGTGTTCCTATCCATGCAATCCAAGCCCTCAGGGGGTGGAGGC AGGAGATGATCAAGATTATTCTCTGCTACACTGAGAGTTTGAGGCCTGCC TGGTATATGTGGGACCCATGTTTCAAAAACAAAATAAAACAACAACAAGA ACAACAATACCCAAATCTCTAACTGGACTGCAGAGCTGGCTCATCATTTA AGAGAACTTGCTGTTCCTCCTTCCCAGCCCCCATTGTGGGTGGTTCACAG CTGACTATAGCTCCGTCGGTAGCCATCACCCTCTTTTTGCCTCCTGTACA TGTGGGTACATCACCACCCCTCCCCCATCATGTACATCCCATAACACCAC ATACACCACATAAAAGAATAAAAAATAAAGCCTTTAAAAATCCCCACAAC AACTAAAGCCAAGTCTTCCTCTCCCGTCTGACGGGGTCCTTCATGGTCTC AGAGGAAGACAGGCTGGTGGTCACCTGAGCAGTTTGTTTAAACCTGACAC AGAGACGGAGATTCCATGACTAGATCTGACAATGACCTATACAGGAATGG AAGACAAATTACTTTTAC	CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXACTCAACCTTCCAGAAACTCTTTC CTCATCTGTCAGTTGAGAGGATGATACTATTGGGACACTTTGGCTGGCAG ACATAAGTGTAAAAATAAAATATCCTCATTCATTTATTGGACAAGCAATT ATTAATTATCATCTATGTTCCAGAAATCTCATGTTTAAAATAATACCCAG CCTCTGAAAGGAACTGGTGGCTACTTTCCTAAATTTGATTTATCATTACC CATAATAAATAGCAGACTTATGACTATGAGAAATCTATTGTTTAGAATTT GATAGGAAACAGGCTTATTGTAGAGAATTGCCAAGAAGTGGGATGCTGAA AGAGGCAGGAAGATATCAGGACCTCTCCCAGATCCCCAGAAGGCAGGTTT GTGGGCTTTAGCAAGGAGAAGATAAATTAAGGATCCCATTCTCTGAGTTC ACATGAACGGAAGTGCTAAGGGAGAAGACTAAGAAGTGTTGAAGGTAAGC GGAAGGTCTCAGACACTCCAGCCATCTGCAGAAGAATATTTACATCACAT CATTTACTCCCTGGGGAGTTCTATTGAATTTGGTATCCTCACTGAATAAG CAAAGAAATTGAGGGTTTTTTTTTTTTACAGTGCTAGATCCCAAGAATAT AAAGAAGTGTTATAGACCTCTAATTATACTGGAATGCCCTTGAAGGCAAT TTGCCCGCATACATGCACC
quality values	Open. Hide. 6 8 13 6 9 9 14 19 37 37 29 29 28 22 22 32 24 25 25 28 28 30 48 48 35 29 28 28 28 29 33 25 15 11 11 11 12 25 28 30 30 28 26 26 30 41 53 57 36 36 36 36 42 42 53 53 53 47 47 33 33 20 16 10 10 10 12 14 34 40 57 57 57 57 68 68 68 68 68 68 68 51 51 51 50 50 50 68 68 68 68 68 68 68 68 51 51 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 34 34 18 32 15 24 11 11 13 13 16 21 38 38 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 44 44 42 43 41 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 44 31 27 27 27 40 40 48 57 57 57 59 68 68 68 57 57 57 57 57 57 59 59 48 48 48 48 48 57 57 57 57 53 53 50 48 59 37 30 21 11 8 8 8 8 10 8 11 11 11 24 28 23 18 18 24 24 13 13 13 13 15 28 32 41 43 59 59 59 59 59 59 59 59 59 59 59 68 59 59 59 59 59 59 59 68 68 68 59 59 48 28 19 8 8 8 12 23 44 57 59 59 59 42 41 28 27 41 36 43 44 42 42 32 30 30 32 42 42 44 44 57 57 68 57 59 57 57 57 57 57 68 68 68 68 68 68 68 68 57 57 68 59 59 59 59 57 59 59 68 68 59 59 52 52 52 52 52 57 59 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 57 57 68 68 68 57 57 57 57 57 57 57 57 47 48 48 57 57 68 68 68 68 68 68 68 68 57 57 47 57 43 47 59 59 59 59 59 43 43 43 43 43 39 39 47 43 43 42 48 48 57 43 57 48 48 48 48 40 42 39 43 37 32 31 27 29 37 37 37 37 59 37 37 30 28 25 33 37 37 37 37 37 30 32 32 31 31 39 39 39 41 42 50 50 50 50 50 50 50 48 48 48 46 40 40 39 47 37 34 24 31 29 35 39 39 37 41 41 34 34 23 18 20 28 28 22 13 11 11 12 21 15 15 12 20 15 21 24 33 37 35 35 27 24 23 15 15 13 13 13 16 16 18 24 14 14 14 19 19 23 21 16 10 10 10 15 12 18 18 16 17 19 17 16 10 10 10 10 10 17 10 10 10 10 10 9 10 10 13 13 10 11 13 11 13 13 17 10 8 8 8 8 8 8 8 9 9 9 10 10 17 9 9 9 12 9 6 6 6 6 8 8 8 8 8 8 10 11 9 9 9 10 8 11 14 9 8 8 10 10 10 9 9 9 9	Open. Hide. 11 11 9 15 15 8 6 6 8 21 25 37 37 37 42 48 50 53 53 53 57 57 53 53 50 50 50 50 47 41 27 21 10 10 9 12 13 9 19 12 21 21 31 29 44 43 57 57 50 53 53 50 50 53 53 53 53 53 57 57 43 32 26 36 22 24 14 16 16 26 21 42 42 47 48 50 53 68 68 68 68 68 68 68 68 51 51 51 51 51 51 68 68 68 68 68 68 68 59 59 53 53 53 53 53 53 59 53 53 53 53 53 53 59 59 59 59 59 33 33 33 33 28 22 10 10 9 9 9 18 25 34 41 42 50 50 50 50 53 53 57 57 57 57 57 53 53 53 53 53 53 53 53 53 53 53 57 68 68 68 68 68 51 51 50 50 50 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 43 44 46 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 59 59 48 48 27 27 21 21 22 12 8 8 8 8 9 19 12 15 12 14 13 10 10 10 10 11 12 12 15 19 30 34 41 50 50 53 53 57 57 57 57 57 59 57 57 57 57 57 57 59 59 57 57 57 57 44 43 34 25 25 25 40 40 48 57 68 59 59 59 59 37 37 30 36 36 43 32 32 20 28 30 59 59 68 68 59 59 59 59 59 59 57 57 57 54 54 54 59 59 59 57 59 59 59 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 59 59 57 57 57 57 68 68 68 68 68 68 68 68 68 59 59 59 59 57 68 68 68 68 68 68 68 68 57 57 59 59 59 59 59 59 59 59 57 48 48 48 59 54 54 54 54 57 57 48 57 46 46 43 47 46 57 48 54 54 57 57 57 59 48 57 57 57 48 48 48 48 48 48 57 48 48 48 57 57 59 59 43 43 40 43 40 59 41 41 37 37 37 36 35 41 44 44 43 46 46 46 59 59 44 30 27 26 28 30 30 37 37 41 42 48 48 59 59 59 59 59 48 48 48 48 48 47 47 47 47 44 44 44 37 37 39 39 37 35 31 35 43 44 44 47 59 37 33 28 28 28 23 20 17 30 30 47 47 59 59 37 37 37 39 40 37 37 39 39 37 37 32 29 27 41 35 31 31 33 35 31 32 25 9 9 8 8 8 9 19 37 37 37 37 47 37 23 15 8 8 8 10 10 6 6 6 8 12 15 28 28 23 15 15 18 17 14 14 18 12 13 11 11 11 11 11 11 11 10 10 10 10 10 10 9 9 8 10 10 10 8 8 8 9 11 10 14 10 10 9 10 9 10 10 12 17 23 13 15 10 9 9 10 11 11 10 11 11 11 15 17 17 12 12 9 9 8 8 8 6 6 7 6 6 6 8 9 9 9 9

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no272_o13.g1 MSMg01no272_o13.g1 CHROMAT_FILE:
MSMg01no272_o13.g1 PHD_FILE: MSMg01no272_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:10 2005
         (294 letters)



>mm_chr8_106140979_106141672
          Length = 694

 Score =  522 bits (270), Expect = e-153
 Identities = 285/290 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgggatgctgaaagaggcaggaagatatcaggacctctcccagatccccagaaggcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgggatgctgaaagaggcaggaagatatcaggacctctcccagatccccagaaggcagg 260

                                                                       
Query: 61  tttgtgggctttagcaaggagaagataaattaaggatcccattctctgagttcacatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgtgggctttagcaaggagaagataaattaaggatcccattctctgagttcacatgaa 320

                                                                       
Query: 121 cggaagtgctaagggagaagactaagaagtgttgaaggtaagcggaaggtctcagacact 180
           || |||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||
Sbjct: 321 cgaaagtgctaagggagaagactaagaagtgttgaagataagctgaaggtttcagacact 380

                                                                       
Query: 181 ccagccatctgcagaagaatatttacatcacatcatttactccctggggagttctattga 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagccatttgcagaagaatatttacatcacatcatttactccctggggagttctattga 440

                                                             
Query: 241 atttggtatcctcactgaataagcaaagaaattgagggtttttttttttt 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttggtatcctcactgaataagcaaagaaattgagggtttttttttttt 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information