BAC Information

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BAC

Clone NameMSMg01-273C10
Chromosome8 (Build37)
Map Location 32,213,555 - 32,213,839
singlet/doubletsinglet
Overlap genenone
Upstream geneEG628189, LOC547008, Dusp26
Downstream geneRnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568, 7420700N18Rik, LOC100041329, EG330731, LOC100041340, Nrg1, 2010007E15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273C10.T7 (MSMg01no273_c10.b1)MSMg01-273C10.TJ (MSMg01no273_c10.g1)
ACCAG412233AG412234
length731730
length of high quality
(start - end)
316 (39 - 354)287 (70 - 356)
definitionCHROMAT_FILE: MSMg01no273_c10.b1 PHD_FILE: MSMg01no273_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:28 2005CHROMAT_FILE: MSMg01no273_c10.g1 PHD_FILE: MSMg01no273_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
ATGTTTTTATTTATCTGTCCATGATAACTAATGAGGTTAACCCTTTTTTG
TTTTTTACTATGTTTTAATAGCCATTTTTGTTTCATCTTTTAGGGTTTGC
TCAGTTCGGTGGCTCATTTATTGTTTTGTGTTCTGGTATTAATATTTGCA
GCTCTTCATATATTCCAGGTATCAACACCCCTGTCTGAAGTATAGCTGAA
AGCAATTTTCTCCCACTCTGTGGGCTGTCCCTCACCTCTGCTGATCGGTT
CCCTTGCTGTGCACAAGCTTCTTAATTTCACAAAGCCCTATTGTCATTTC
TNGTAGATATCCGNTCTGTTCCCCAGGGTCTATTTAGAAAGTTCTTGCCT
ATACCTTTACCCTGAATTAATCTCTTCTAGTATTGACACTTAAAATTAAG
GTCTTTGATCCATTTTGATTTTTTTTATGCAGAATAAGAGAGGGGCATCT
AACTTCATTCTGCAGGTAGATATTCAGTTTGCTAGCAAAATTTACTAAAA
AAAAGAAAAGATCAGTCTTTTCCCAGCACATATTTTTTGAAAATATTTGT
CAAAATGTGTATAAAGTCTTAAGTCTCAATTAATTCTTTTGAGATTTGAA
TGCAGTGTATTTTGATCATATCACCCCCTAGTCCTTTCCTAACTTCTTTC
AGATCTGCTCCTCTCTACCATTCTCATACTN
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACAGAGAAACCCTGT
CTCAAAAAATAAAAACAAAGGCAATAACGAAACAAAAACAAAACCAGAAC
AGATAAGAATACACAGTGGGATTTATTTTATTTTTTATTTTTTGGATATA
AAGAAAAAGGAAGTTGTAACATCTGTGGAAAAATTAATGGAGCTAGGAAC
CAACCCCCTTAAATGAAAAGAGTCAGACTGGAAAAGATCCTAGTCTTTTT
AACAAAACAAAACCAAAAACAGTCTAATTTTTGGTCACTCTACTTCACTC
TTAGTTAATTTGGTACCCCCCCCCCCAGACCTGTGGAGAAGCCACAGGGT
GAGGAGCCAGATTTGTCTCAAGAACAGCGTCCTGAGAGTGGACGTTGCTG
ACTCTTGTAACCACAGCGCTGGCTGCCACCTCCTGAGAGATCCCGAGGCT
GTCACTGAGGCACACTCTGCAGATGACCCATGGAAATCAGGAGACAAGAA
CAAGTAGGTTTTTTTTTTTCTTTAGTTTTTTGAGACAGGGTTTCTCTGTG
TAGCCTTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAAC
TCAGATATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCCTGC
GCCACCACGCCTGGCTAAGAAGAACAAGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_c10.g1 MSMg01no273_c10.g1 CHROMAT_FILE:
MSMg01no273_c10.g1 PHD_FILE: MSMg01no273_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:28 2005
         (287 letters)



>mm_chr8_32213355_32214041
          Length = 687

 Score =  536 bits (277), Expect = e-157
 Identities = 283/285 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagccagggctacagagaaaccctgtctcaaaaaataaaaacaaaggcaataacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 caggacagccagggctacagagaaaccctgtctcaaaaaataaaaacaaaggcaataaca 260

                                                                       
Query: 61  aaacaaaaacaaaaccagaacagataagaatacacagtgggatttattttattttttatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacaaaaacaaaaccagaacagataagaatacacagtgggatttattttattttttatt 320

                                                                       
Query: 121 ttttggatataaagaaaaaggaagttgtaacatctgtggaaaaattaatggagctaggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttggatataaagaaaaaggaagttgtaacatctgtggaaaaattaatggagctaggaa 380

                                                                       
Query: 181 ccaacccccttaaatgaaaagagtcagactggaaaagatcctagtctttttaacaaaaca 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 ccaacccccttaaatgaaaagagtcagactggaaaagatcctagtcttttaaacaaaaca 440

                                                        
Query: 241 aaaccaaaaacagtctaatttttggtcactctacttcactcttag 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaccaaaaacagtctaatttttggtcactctacttcactcttag 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)