BAC Information

Click to search

BAC

Clone NameMSMg01-273D20
Chromosome8 (Build37)
Map Location 71,970,722 - 71,971,046
singlet/doubletsinglet
Overlap geneLOC670593
Upstream gene4732435N03Rik, Ints10, Lpl, LOC100041138, Slc18a1, Atp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561
Downstream geneEG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273D20.T7 (MSMg01no273_d20.b1)MSMg01-273D20.TJ (MSMg01no273_d20.g1)
ACCAG412298AG412299
length727732
length of high quality
(start - end)		321 (42 - 362)291 (73 - 363)
definitionCHROMAT_FILE: MSMg01no273_d20.b1 PHD_FILE: MSMg01no273_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:34 2005CHROMAT_FILE: MSMg01no273_d20.g1 PHD_FILE: MSMg01no273_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:34 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACTTTTCAGCAATTGACTATGATTGCTGACTGCTCTCCTCCCACCTTTT
CTCAAGAGAAAATATGAGGAACACTTAGCTCTTAATTAAAACACAAAGAA
AGGTGCACGAGCACGCAAACACACAAACACACACACACACACACACTAAA
AAGAATTAAAGACAAGATCGGGCATGCTCAGGGTGGTTTGGCTGTAGACA
CTTATGGAAGTCTAAAAGGAAGGATTCCAGGCCTGAAGGAGATAGGAACT
CCAGAGAATGACCAACCACCAGAATCAAATAACATGAACCCTCAGGGCAC
TCAGAGATGGAACTATTATTCCCCACCCCCCCCGGGTTGGACGGATATCT
CCGAGCACCTATGTAGCAGAGGGGCAAATAGAAAATCACATGGGTCCCAA
TCAACTGGAATGGGGGTATCAAAAAAAGCTGTTCATCCTACCTCAGTTTT
ATTCTTCTAGCTGAGCTACTTTTTCTGTCCTCAGAGAGAGACGAAGTGCC
AGGGTTTGGACATACAGGGAGTCCCAAACTGCTCAGAGGTGAAGTGGAGG
AGGGGCAGGGAGAGACTGTGGGACTGTGTGACCAGGAGGGGGTCACTGAG
CTAGATGTAAACATAAGAAAAAAATTAAATTAAATTTTTACAGAAATCAT
TACAGTTTTGAAATGTATCTTTCATCA

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGA
AGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCA
GTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGC
AATACCTCTCCTGTGCTTATATCCCCACCACCCCCCAACAGGTAAGAAGG
ACACATGCTCCACTATGTTCATAGCAGACATATAAATATAATAGCCAGAA
GCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAAGT
GGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCT
AAACACATGAAACTCAAGGAGAATGAAGACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_d20.b1 MSMg01no273_d20.b1 CHROMAT_FILE:
MSMg01no273_d20.b1 PHD_FILE: MSMg01no273_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:34 2005
         (321 letters)



>mm_chr8_71970518_71971238
          Length = 721

 Score =  507 bits (262), Expect = e-148
 Identities = 307/326 (94%), Gaps = 10/326 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacttttcagcaattgactatgattgctgactgctctcctcccaccttttctcaa 64
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 205 gaattcacttttcagcaattgactatgattgctgactgctcagctcccaccttttctcaa 264

                                                                       
Query: 65  gagaaaatatgaggaacacttagctcttaattaaaacacaaagaaaggtgcac-gagcac 123
           ||| |||||||||||| ||||||||||||||||||||||||| ||| ||||||  | |||
Sbjct: 265 gaggaaatatgaggaatacttagctcttaattaaaacacaaacaaaagtgcacaca-cac 323

                                                                       
Query: 124 gcaa------acacacaaacac--acacacacacacacactaaaaagaattaaagacaag 175
           ||||      ||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcaaacacacacacacaaacacaaacacacacacacacactaaaaagaattaaagacaag 383

                                                                       
Query: 176 atcgggcatgctcagggtggtttggctgtagacacttatggaagtctaaaaggaaggatt 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atcgggcatgctcagggtggtttggctgtagacacttatggaagtctaaaaggaaggatt 443

                                                                       
Query: 236 ccaggcctgaaggagataggaactccagagaatgaccaaccaccagaatcaaataacatg 295
           |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 444 ccaggcctgaaggagataggaactccagaggatgaccaactaccagaatcaaataacatg 503

                                     
Query: 296 aaccctcagggcactcagagatggaa 321
           ||||||||||||||||||||||||||
Sbjct: 504 aaccctcagggcactcagagatggaa 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |