BAC Information

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BAC

Clone NameMSMg01-273N02
Chromosome8 (Build37)
Map Location 30,355,018 - 30,355,294
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666446, LOC100042598, Unc5d
Downstream geneLOC100041237, EG628189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273N02.T7 (MSMg01no273_n02.b1)MSMg01-273N02.TJ (MSMg01no273_n02.g1)
ACCAG412718AG412719
length738805
length of high quality
(start - end)
295 (68 - 362)---
definitionCHROMAT_FILE: MSMg01no273_n02.b1 PHD_FILE: MSMg01no273_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:15 2005CHROMAT_FILE: MSMg01no273_n02.g1 PHD_FILE: MSMg01no273_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AACTCCATCTCGAGCTAATATCAAAATCATGGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGGTGTGGTGATGCACCAGCATTTGATTTAGCAAAAGCATTT
TATGCAGTTATCAAGTAAAAGTCGGTATATTAATAACATTAATCTTCATA
GTTTTGTCCTCATGAGATCATTGGTGACCTTGCGATCAAGTGCAAATATT
TATGTGGGAAGTGGAAATGGTGAGGAAGCAGAAAGGGCTCATGTAATTTA
TCTCAGGCCCTTACTCATGTAATATTTATTGCTCTTTTAAGAAGTTTAAG
AGTGTGTATAAGATACAGGACGTTAGCATAAAGGTATAGAAAGATCAAGA
AGAGATTTGGGGGAAGATTTGGAGTTGGAATGTAATTCATTTTAAATTAC
ATTTTTTCTTTAGGCGTACAAAGAAAAAAATCATATTTATATTCATATTT
GGAGAAAATGTCCCCTTCAGCAAGCCCACACTGATTTGGGGGGAGGTCCC
CTATGCATTGATTTCTTGGATACTTTCCTGTTTTTTTCTTTATTTCGCCA
AAATATCGTTTGCGAGGGCAATCTATATTTTATGTCCATTTATTTACTCT
CAGGGACTTTAAAGTTTTCAATGGGGAACGCATTGCGAAAATTAATTATA
CTTTTGGAACAAACATCTTTACCTTTTACGTGATGATG
ACTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCCCAAAATTCTGCGGTTAAAGCCATCTGTGTTTCTCAAGT
ATGAAAGTTTGTGAGTGCCCCCCTGTGTCTGTGTGTGTGTGTGCCTCCGT
GTGCCAACCAAAAAAACACAAAAAACCCCCCCACCAACCCACCCCCCAAA
CAACCACACACCCAACCCCCCAAAACCCTCTTACACAACACCACACCCCA
ACACCCAAACCAAACCCCACCAACACAAAAACACCCAAACAAAAAACCAC
ACACAAAACCCAAAATAAACCCAAACAACAAAAACAACACAAAAACACAA
AAAAAAATATTAACCCCCCCCCCCCCCCCCCCCCAAAACCACAAAAAATA
AAAATCCCAAAACCACCCCCCCCCACCCAAACAAAAAAAAAAAAAAACCC
CAACCCCCCAAACCACACCACCCCCCCCACAACACCAACAAAATCACCAC
ACACACAAAACAACATCAACACCCTTCACAAACACCACCCAACCAACCAC
ACCAACCCCCCCCACCAACCCCCCAAACCCCACCCACCCCCCCCAAACAC
CAAAACAAAACACACCAAAAAAACAAACAACCACCCCCCCAACCCACCCC
CCCCCAAACACCCACCCCCCCTACACCCACAAACCCAACCAACCCCAAAA
AACAAAAATTACCCCACACCCACCCCCAACACCACCCCAAACAACCCAAA
ACCCCCAAAAACAACCTACAACCAAACCCCCCACCCCCCACCCCACACCA
CCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_n02.b1 MSMg01no273_n02.b1 CHROMAT_FILE:
MSMg01no273_n02.b1 PHD_FILE: MSMg01no273_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:15 2005
         (295 letters)



>mm_chr8_30354804_30355498
          Length = 695

 Score =  489 bits (253), Expect = e-143
 Identities = 271/277 (97%)
 Strand = Plus / Plus

                                                                       
Query: 15  gtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgtggtgatgcaccagcatttgatttagca 74
           |||||||||||| ||||||||| ||||| ||||||| |||||||||||||||||||||||
Sbjct: 215 gtgtgtgtgtgtttgtgtgtgtttgtgtagtgtggtaatgcaccagcatttgatttagca 274

                                                                       
Query: 75  aaagcattttatgcagttatcaagtaaaagtcggtatattaataacattaatcttcatag 134
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 275 aaagcattttatgcagttatcaagtaaaagtgggtatattaataacattaatcttcatag 334

                                                                       
Query: 135 ttttgtcctcatgagatcattggtgaccttgcgatcaagtgcaaatatttatgtgggaag 194
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 335 ttttgtcctcatgagatcattggtgaccttgcgatcaagtacaaatatttatgtgggaag 394

                                                                       
Query: 195 tggaaatggtgaggaagcagaaagggctcatgtaatttatctcaggcccttactcatgta 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tggaaatggtgaggaagcagaaagggctcatgtaatttatctcaggcccttactcatgta 454

                                                
Query: 255 atatttattgctcttttaagaagtttaagagtgtgta 291
           |||||||||||||||||||||||||||||||||||||
Sbjct: 455 atatttattgctcttttaagaagtttaagagtgtgta 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)