Query= MSMg01no273_p01.b1 MSMg01no273_p01.b1 CHROMAT_FILE:
MSMg01no273_p01.b1 PHD_FILE: MSMg01no273_p01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:24 2005
(514 letters)
>mm_chr8_18609418_18610330
Length = 913
Score = 884 bits (457), Expect = 0.0
Identities = 490/501 (97%), Gaps = 3/501 (0%)
Strand = Plus / Plus
Query: 5 gaattctcagttgactcttctgggctagctgaattcctgccgtaagtcagccactggcag 64
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcagttgattctt-tgggctagctgaattcctgccgtaagtcagccactggcag 263
Query: 65 aagctcatctaaaccgaccaggataaaggattaacactgaggaatcttaggggagaaaag 124
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aagctcatcaaaacagaccaggataaaggattaacactgaggaatcttaggggagaaaag 323
Query: 125 cttcat-gacagaaagtgtgacagtggccagttagatctcagactataacatgcacgtct 183
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cttcattg-cagaaagtgtgacagtggccagttagatctcagactataacatgcacgtct 382
Query: 184 gttctaggccacgtttagttttacacaggatgcctcaggaagtgtaacgctgacacttcc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gttctaggccacgtttagttttacacaggatgcctcaggaagtgtaacgctgacacttcc 442
Query: 244 tctctcagtgtcccgtggtcagcctcctgcctaggactgctacattcctgccaggctgtc 303
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 443 tctctcagtgtcccgtggtcagcctcctgcccaagactgctacattcctgccaggctgtc 502
Query: 304 caggaaccagcactcaaatgctttctcatgccttactatattatattcttcactgttttc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 caggaaccagcactcaaatgctttctcatgccttactatattatattcttcactgttttc 562
Query: 364 atttagatttctcttagttttctgaaatagcaaggtgactcctttgtgctgcatgattca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 atttagatttctcttagttttctgaaatagcaaggtgactcctttgtgctgcatgattca 622
Query: 424 ggaaacgctgtattccagagtcctttactgctcaagtttctcctaccttgggtagttagt 483
|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 623 ggaaacgccctattccagagtcctttactgctcaagtttctcctactttgggtagttagt 682
Query: 484 taaggagctagaatagggggg 504
|||||||||||||||||||||
Sbjct: 683 taaggagctagaatagggggg 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 913
Length adjustment: 10
Effective length of query: 504
Effective length of database: 903
Effective search space: 455112
Effective search space used: 455112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no273_p01.g1 MSMg01no273_p01.g1 CHROMAT_FILE:
MSMg01no273_p01.g1 PHD_FILE: MSMg01no273_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:24 2005
(572 letters)
>mm_chr8_18770104_18771073
Length = 970
Score = 990 bits (512), Expect = 0.0
Identities = 557/572 (97%), Gaps = 2/572 (0%)
Strand = Plus / Minus
Query: 1 actgcacattagggagaggaaatgacctgcaaagcaggagccttcccacctctggggctg 60
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 770 actgcacattagggagaggaaatgacctgcaaagcaggagccttccca-ctttggggctg 712
Query: 61 gagtgggagggcagagctggcgccatccctccaggtccctggacttcccttagtgtcaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 gagtgggagggcagagctggcgccatccctccaggtccctggacttcccttagtgtcaaa 652
Query: 121 cccagttccttctgtttccatggccactactgtggctcagcatctcagggtacctctgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 cccagttccttctgtttccatggccactactgtggctcagcatctcagggtacctctgct 592
Query: 181 tgggggaccgcctccatcaggtctgtctttatctgccagcacctggttgctatggaagtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tgggggaccgcctccatcaggtctgtctttatctgccagcacctggttgctatggaagtc 532
Query: 241 ctcactagaggtagctgttccaaattccgacatataaagcagaaggcttcttttttttga 300
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 531 ctcactagaggtagctgttccaaattccgacatataaagcagaaggcttcgggtgtttga 472
Query: 301 cctcttgtcccccaagtgagaactgttcttagtcgccctgtacaaggattctgattatcc 360
|||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 471 cctcctgtcccccaagtgagaactgttcttagtcaccctgtacaaggactctgattatcc 412
Query: 361 ttaattaccatattggtatttgcaatcttgctacctcctgtcagattcaaatttaactca 420
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ttaattaccacatt-gtatttgcaatcttgctacctcctgtcagattcaaatttaactca 353
Query: 421 aaaagagttccaggatgtgcgcaatctataatgtagggaatttaaaaggagaggggaaac 480
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 352 aaaagagttacaggatgtgcccaatctataatgtagggaatttaaaaggagaggggaaac 293
Query: 481 atatatagttttgcttgtaggagcacacaatctagcaggaggcacatagaagcactcaat 540
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 292 atatatatttttgcttgtaggagcacacaatctagcaggaggcacatagaaacactcaat 233
Query: 541 ggggtcagggaggccagtctcttcatataaat 572
||||||||||||||||||||||||||||||||
Sbjct: 232 ggggtcagggaggccagtctcttcatataaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 970
Length adjustment: 10
Effective length of query: 562
Effective length of database: 960
Effective search space: 539520
Effective search space used: 539520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
