BAC Information

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BAC

Clone NameMSMg01-274A08
Chromosome8 (Build37)
Map Location 105,204,074 - 105,204,349
singlet/doubletsinglet
Overlap geneCdh11
Upstream genenone
Downstream geneEG667618, LOC100041368, 1600027J07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274A08.T7 (MSMg01no274_a08.b1)MSMg01-274A08.TJ (MSMg01no274_a08.g1)
ACCAG412869AG412870
length734733
length of high quality
(start - end)
307 (375 - 681)280 (73 - 352)
definitionCHROMAT_FILE: MSMg01no274_a08.b1 PHD_FILE: MSMg01no274_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:30 2005CHROMAT_FILE: MSMg01no274_a08.g1 PHD_FILE: MSMg01no274_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:30 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACTATGATACTCAGATTAGATCAAACTAGCCTCTGACTTCTTAAAATTT
CTGTGATCCTTCTGTGCCCGTCTACAGAGCTCTGGATTCCATACCTGTAC
CCCTCCCACACACATACCTTAGTCATTCATTTCTTCATTGATTATTTTCA
TTACCATCATCATTTCCTGAGGTCTGCCTTGTCTTTCCTTCCATCTCACA
GACTATGACATAAGATTCCTCTTATTTTCCATTTGTGCTTAAGTCTTGGT
TTATGCTGTGGTTGGCCAACTGTAATGGTTATGAAATTCTGGTGTTTTTT
TTTTTTTTTTGGCACCCCACCTTCTCTATTCTTAAAATAGAAGCTTTTGC
TTTAGTATTCAATTCAGGCACCATATCCTTTAAGCATCCTCTCTTTACTG
TGGTAGCCTCTGGCATCCTTGCTGTGGATGCACACATATGATCAATGAAT
AATAGAGAGTTTCTGGGTTCTAGACATTGTACTAGTGGCTTTATATTCCC
ATTTCTCTTGATCATTGCAGCAACCTTTCAACGAATATTATTCTTTTTTT
TCCATTTTTTATTAGGTATTTCGCTCATTTACATTTGCTATGCTATACCA
AAAGTCCCCCATAGCCACCCACCCCCTCTCCCCTACCCACCCACTCCCCT
TTTATGGCCCTGGCGTTCCCCTGTACTGGGGCAT
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTATGGATGATTGATAGGATATAGGTTT
TTCCTCAAGATGATTGCCAGGTTGGGGGTGTGCCATGTGTATAACTAACA
GGCTGTAGCTATTTTCTGTGGATGGTTGATAGGTTATGGGCTTTTCCTAT
GAAGACTGGAAGGTTGTGGGTATTTGCTATGGATAATTGACAAGCTGTAA
TTGTTACGTATGCCTGATAGGCTGTGGGAATGTCCTAAGGATAATTGTCA
TGATCTGGGTATATCCTATGAATGATTGAAAGTCTGTGGGAATTTCCTGT
GAATGATAATACCCCGGCGTCCCCATTGTGGGTAAATGACAGGATTTGGG
TACTTTCTATACATGAATGACAAAATGTGGACATTTCCTATGGATGATTT
GCAGGCAGTGGCCATTTACTATAGATGAGTGACAGGCTGTGGACATATCC
TGTGGATGACTGAAAGGCTGTGCATGTTTCCTGTTTGTATTGAAAAGTTG
TAGATGTGTACTATGTATGGTTGGCAGGCTTTGGGTATTTCCTGTGAATG
ATTGACAGGGTATAGGCATTTCCTATTGAAGATTAACCAATTGTGGGCTT
GTCCTTTGGACGAGTGACAGGGTTGGTATGTGTTTACTGTGGATGATTGA
CAGTCTGTGGCCAGGACATGTGGTTGAATGACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_a08.b1 MSMg01no274_a08.b1 CHROMAT_FILE:
MSMg01no274_a08.b1 PHD_FILE: MSMg01no274_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:30 2005
         (307 letters)



>mm_chr8_105204043_105204749
          Length = 707

 Score =  221 bits (114), Expect = 6e-62
 Identities = 207/276 (75%), Gaps = 58/276 (21%)
 Strand = Plus / Minus

                                                                       
Query: 4   attcttaaaatagaagcttttgctttagtattcaattcaggcaccatatcctttaagcat 63
           |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 307 attcttaacatagaagcttttgctttagtattcaattcaggcaccatattctttaagcat 248

                                                                       
Query: 64  cctctctttactgtggtagcctctggcatccttgctgtggat------------------ 105
           ||||||||||||||| | ||||||||||||||| ||||||||                  
Sbjct: 247 cctctctttactgtgctggcctctggcatccttactgtggatgctgtgttatgctcctag 188

                                                                       
Query: 106 ----------------------------------------gcacacatatgatcaatgaa 125
                                                   |||||||||| |||||||||
Sbjct: 187 gcttacttccctagtttctctaagccatgaacatagccaagcacacatataatcaatgaa 128

                                                                       
Query: 126 taatagagagtttctgggttctagacattgtactagtggctttatattcccatttctctt 185
           |||||||||||||||||||||||||||||||  ||||||| |||||||||| ||||||||
Sbjct: 127 taatagagagtttctgggttctagacattgtgttagtggccttatattcccttttctctt 68

                                               
Query: 186 gatcattgcagcaacctttcaacgaatattattctt 221
           |||||||||||||||||||||| |||||||||||||
Sbjct: 67  gatcattgcagcaacctttcaatgaatattattctt 32


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space:   208004
Effective search space used:   208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)