BAC Information

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BAC

Clone NameMSMg01-274C19
Chromosome8 (Build37)
Map Location 86,663,414 - 86,821,011
singlet/doubletdoublet
Overlap geneCc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130
Upstream geneLOC100039688, Tbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1
Downstream geneCacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274C19.T7 (MSMg01no274_c19.b1)MSMg01-274C19.TJ (MSMg01no274_c19.g1)
ACCAG412980AG412981
length750753
length of high quality
(start - end)		686 (65 - 750)627 (66 - 692)
definitionCHROMAT_FILE: MSMg01no274_c19.b1 PHD_FILE: MSMg01no274_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:41 2005CHROMAT_FILE: MSMg01no274_c19.g1 PHD_FILE: MSMg01no274_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,663,414 - 86,664,099)(86,820,385 - 86,821,011)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCGCGGAATTCCAGGA
CTTTCCATTAGATGGTTTTCTGAACATCTTCACTGTGTAGCTCAGGTTGG
CTTTGATTGTGCCGCCCCTGCCTCAGCCTCCCAAGTCCTGGGATTACAGG
TATGTGTCATGCCAGTCTTATTGCTTTCTCTATACCGAAGATGGAGCCTG
GGGCTTTGTGCATGCTAGGAAGTGCCCACCCAGAGTCTGAGCTGATCCGA
GCAGAGGAGCTAGGAACCGCAGAGTGCCTGAACTCCTGACTCCCCTTCCC
GGGCTGCTGTTCATTCCCATGGCACTTGCTTCTCTTGTGCACCCTGGACT
CTTTCAGATCCTGACAGACTGTGAGGTGGGCTTCAGCTGGGAGAGGGGCC
CCCAATGTGGAGGGTAAGTGTTTCTACAGAAGACCTGTGAGCAGCTGAGA
ACTTCGAGATTTCTACTCTATGGAGGGCCTGGCAGGAGTGAACAGAATGG
AGGAGGGAGGGAGGGGGACAGTCGGAGACAGAACTAGCTCCAAACTACCT
CCTGACTAAGAACTTTCCAGTATCCCTGACGCAAACAGTGCTGTCAAGAC
ACACTCCAGTCTGGTTAAGACGTCTACAAAGTTCCTGAGTGCATAGTTAT
GGCTGCATGAAGAGCCGTAAGCGGGAACAAGATCAGCAAAAGGCCCAGAG
GCAGGAGCAGGGGGTGGGGAGCTTGCCCTAGCACAGACCTTACCTGGGGA


GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCTGTGGCTCACACACCTCCACACCGCAGACCATC
ACTCAGAAAGACCTCCATTCTACTGGATGCCCCACACACACATGCACACG
CACACACAAGCACACACACACACACACACACACTTTCAATTTAAAAAAAC
TAAAGCGGGGCTCACTAGATAACCTTGGCAGAATCAACTTTGTGACTTTG
TGATCCTCCTGCCTCTGTCTCATGAGTGTAGATGTGAATCGCCACGATTG
GCCCCCATGATTCCCATTCTATGAGTTCCAAAAAGACAGCGAGCAGTACA
CTCATTCTATGAGTTCCAAAAGACAGCGAGCAGTACACTATGTCGCAGGG
CTGAGGAGGGCTGAGGAGGGCTGAGGTGCTCAGTGAGCTCCTGACTCAGA
ATGAAGACATTTGGGGGCGAGGGTGGGCTGGGGGTGGCCATGGCATGACT
GGTTACGCACACAGAGTCCCAGTACCTGGGACTGAAGCAGGAAGATGGTG
AGTTTCAGGATAGCCTGGGCAACATAGTAAGATTCTAATTGTACATTCCA
AATCAACAAGGGGAGAGTATACCTGACATATCACTTTCCACCAGGGAGTG
TCCTACAAGGAGCACTAGTGTTTGAGCTTGTGACAGAAGTGATAACCGGG
ACATGCAAAGGGTTCCTCTCTTTCTCCTGGCTGGCCCTTTTAGGGAACCT
CCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_c19.b1 MSMg01no274_c19.b1 CHROMAT_FILE:
MSMg01no274_c19.b1 PHD_FILE: MSMg01no274_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:41 2005
         (686 letters)



>mm_chr8_86663214_86664299
          Length = 1086

 Score = 1280 bits (662), Expect = 0.0
 Identities = 680/686 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttttctgaacatcttcactgtgtagctcaggttggctttgattgtgccgcccctgcctc 60
           ||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||
Sbjct: 201 gttttctgaacatcttcactgtgtagctcaggttggctttgatcgtgcagtccctgcctc 260

                                                                       
Query: 61  agcctcccaagtcctgggattacaggtatgtgtcatgccagtcttattgctttctctata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcctcccaagtcctgggattacaggtatgtgtcatgccagtcttattgctttctctata 320

                                                                       
Query: 121 ccgaagatggagcctggggctttgtgcatgctaggaagtgcccacccagagtctgagctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccgaagatggagcctggggctttgtgcatgctaggaagtgcccacccagagtctgagctg 380

                                                                       
Query: 181 atccgagcagaggagctaggaaccgcagagtgcctgaactcctgactccccttcccgggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atccgagcagaggagctaggaaccgcagagtgcctgaactcctgactccccttcccgggc 440

                                                                       
Query: 241 tgctgttcattcccatggcacttgcttctcttgtgcaccctggactctttcagatcctga 300
           |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||
Sbjct: 441 tgctgttcattcccatggcacttgcttctcttgtgcaccctggactcgcacagatcctga 500

                                                                       
Query: 301 cagactgtgaggtgggcttcagctgggagaggggcccccaatgtggagggtaagtgtttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagactgtgaggtgggcttcagctgggagaggggcccccaatgtggagggtaagtgtttc 560

                                                                       
Query: 361 tacagaagacctgtgagcagctgagaacttcgagatttctactctatggagggcctggca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacagaagacctgtgagcagctgagaacttcgagatttctactctatggagggcctggca 620

                                                                       
Query: 421 ggagtgaacagaatggaggagggagggagggggacagtcggagacagaactagctccaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggagtgaacagaatggaggagggagggagggggacagtcggagacagaactagctccaaa 680

                                                                       
Query: 481 ctacctcctgactaagaactttccagtatccctgacgcaaacagtgctgtcaagacacac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctacctcctgactaagaactttccagtatccctgacgcaaacagtgctgtcaagacacac 740

                                                                       
Query: 541 tccagtctggttaagacgtctacaaagttcctgagtgcatagttatggctgcatgaagag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tccagtctggttaagacgtctacaaagttcctgagtgcatagttatggctgcatgaagag 800

                                                                       
Query: 601 ccgtaagcgggaacaagatcagcaaaaggcccagaggcaggagcagggggtggggagctt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ccgtaagcgggaacaagatcagcaaaaggcccagaggcaggagcagggggtggggagctt 860

                                     
Query: 661 gccctagcacagaccttacctgggga 686
           ||||||||||||||||||||||||||
Sbjct: 861 gccctagcacagaccttacctgggga 886


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space:   727376
Effective search space used:   727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no274_c19.g1 MSMg01no274_c19.g1 CHROMAT_FILE:
MSMg01no274_c19.g1 PHD_FILE: MSMg01no274_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:41 2005
         (627 letters)



>mm_chr8_86820260_86821286
          Length = 1027

 Score = 1212 bits (627), Expect = 0.0
 Identities = 627/627 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgtggctcacacacctccacaccgcagaccatcactcagaaagacctccattctactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 cctgtggctcacacacctccacaccgcagaccatcactcagaaagacctccattctactg 693

                                                                       
Query: 61  gatgccccacacacacatgcacacgcacacacaagcacacacacacacacacacacactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 gatgccccacacacacatgcacacgcacacacaagcacacacacacacacacacacactt 633

                                                                       
Query: 121 tcaatttaaaaaaactaaagcggggctcactagataaccttggcagaatcaactttgtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tcaatttaaaaaaactaaagcggggctcactagataaccttggcagaatcaactttgtga 573

                                                                       
Query: 181 ctttgtgatcctcctgcctctgtctcatgagtgtagatgtgaatcgccacgattggcccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ctttgtgatcctcctgcctctgtctcatgagtgtagatgtgaatcgccacgattggcccc 513

                                                                       
Query: 241 catgattcccattctatgagttccaaaaagacagcgagcagtacactcattctatgagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 catgattcccattctatgagttccaaaaagacagcgagcagtacactcattctatgagtt 453

                                                                       
Query: 301 ccaaaagacagcgagcagtacactatgtcgcagggctgaggagggctgaggagggctgag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ccaaaagacagcgagcagtacactatgtcgcagggctgaggagggctgaggagggctgag 393

                                                                       
Query: 361 gtgctcagtgagctcctgactcagaatgaagacatttgggggcgagggtgggctgggggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gtgctcagtgagctcctgactcagaatgaagacatttgggggcgagggtgggctgggggt 333

                                                                       
Query: 421 ggccatggcatgactggttacgcacacagagtcccagtacctgggactgaagcaggaaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ggccatggcatgactggttacgcacacagagtcccagtacctgggactgaagcaggaaga 273

                                                                       
Query: 481 tggtgagtttcaggatagcctgggcaacatagtaagattctaattgtacattccaaatca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tggtgagtttcaggatagcctgggcaacatagtaagattctaattgtacattccaaatca 213

                                                                       
Query: 541 acaaggggagagtatacctgacatatcactttccaccagggagtgtcctacaaggagcac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 acaaggggagagtatacctgacatatcactttccaccagggagtgtcctacaaggagcac 153

                                      
Query: 601 tagtgtttgagcttgtgacagaagtga 627
           |||||||||||||||||||||||||||
Sbjct: 152 tagtgtttgagcttgtgacagaagtga 126


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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