BAC Information

Click to search

BAC

Clone NameMSMg01-274D08
Chromosome8 (Build37)
Map Location 49,291,861 - 49,394,173
singlet/doubletdoublet
Overlap geneOdz3
Upstream geneStox2, 4930448N21Rik, D030016E14Rik, Rwdd4a, LOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip, LOC100039801, Cldn22, Wwc2, LOC100040113, Dctd
Downstream gene2900073C17Rik, LOC100039866
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274D08.T7 (MSMg01no274_d08.b1)MSMg01-274D08.TJ (MSMg01no274_d08.g1)
ACCAG413006AG413007
length767756
length of high quality
(start - end)
192 (122 - 313)141 (68 - 208)
definitionCHROMAT_FILE: MSMg01no274_d08.b1 PHD_FILE: MSMg01no274_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:43 2005CHROMAT_FILE: MSMg01no274_d08.g1 PHD_FILE: MSMg01no274_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,393,983 - 49,394,173)(49,291,861 - 49,291,990)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CTATTATCTCACAGAATTTGCATGGCCCTCCCTAACCTAATTTTGTTGTT
CTTCAAAGACAGATTCTCACCGGCTCCCTTCATCGTACCCTGAGGTGGTA
ACCTGGGTGCCCAGTAGCCCACGCTACAGGGTTCTTTGATATAGGTGCAT
GGTAGTGCCTTGGAGACAGTATCTGTCATACTAAAGACAATCAAGATACA
TGACCTACGTATTCAGGATAGTGGGATCATGTGACAAAAGGAACAACGGG
GCAGAAGACTTAAAATTATTTTGTTACAGAAACTGTAGGACATCTAGACT
GTGGGGTGANGTGNATTTCCCANCCGGTCCCGCTTGATGTCAGAATATTG
AATTACCCAGTATACCTCTAAACAAATAAGATATGGCATATTAAGTAATT
GAAGAGGAGCGGGCTAACAGGTTGATTTGTTTCTAGCCAGAAATTAATCA
ACACCGTGTGTGTGCGTGTGTGCGTGTGTGTGTGTGTGTGCGTGTGCGTC
CGCTCTTTCTTCCTTTTTATTTCAATTCCTTTTCCCCCCCCCCTTTTTTT
TTTTTCCCCCTTTTTCCCCTCTCTTTCTCCTTCGCTTTTCCCTTTCTCTT
TACCCTCTTTTTCGCTTTTTTCTTCCTTCTCTTGCTTTTCCCTACCCTCT
CCTCCTTTTTCCCCCTCCTTCCCTTTACCCCTCTTCCTCTCTTTCCACCT
TCCTCACTTTCCCCTTT
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCTGTGGGTTCGGTTGCTGGAACACTGTGAGAG
ACTTTGGGGGGGGCCCTCGAGATGGGTTCTCTTAAACAAGAGGAAATTGA
GACTAGTAAGTAGTGTGTGGGTCACAGAACAGTGCTAGGAGCCTTCATGA
GCAGGAGAGGATTCTGCAGTTGGGAGGGGCTTGGCATGGAGTGACCAGTC
ATGAACCTGCGTACTGTGGGGAGTATTGTGCTGGAAGACGAGAGGACCGT
GGTGGTCGTCCTATTCTGACCATGTCCCACTACCTCTAGGTTAGCAGGAC
AGTTTAACTGAATTCCCCCGACAATCGCCCTAGGGAGGGGTTAAGAGGAG
AACGGCTGATGGGGACAATAAAAAAAAAAAAAGGCCTCGAGCTGAGGATA
ACCCCTACCTTTGTATACGATGGATTATCTGTATTCCTTTCCCTTTCCGC
TTTTCCTTTTTCCGTTCCTCCGCGTCGTACGAGGCTTGATTGTCTGATTC
TCTTGCCTTTATTTGCTTTCTCCCCCATTTATTTGTTTCCCCCCTATCTA
CCGTTCTTGCCTTTTGCCTGCGCCGTGCTTTTCCTTTTCCACACTTCCCG
CTTTCTTTGTCTTTGCTGTCCCTCCCTTCCCCCATTTTTCTCCCCTTTTA
CTCTCCTTGTCGCACTATACCGTTTGTCCATTCTTCCGAGTCTTTTCCTT
GGCGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_d08.b1 MSMg01no274_d08.b1 CHROMAT_FILE:
MSMg01no274_d08.b1 PHD_FILE: MSMg01no274_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:43 2005
         (192 letters)



>mm_chr8_49393782_49394373
          Length = 592

 Score =  339 bits (175), Expect = 9e-98
 Identities = 187/191 (97%)
 Strand = Plus / Minus

                                                                       
Query: 2   gctcccttcatcgtaccctgaggtggtaacctgggtgcccagtagcccacgctacagggt 61
           |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 392 gctcccttcatcgtaccctgaggtggtaacctgggtgcccggtagcccacactacagggt 333

                                                                       
Query: 62  tctttgatataggtgcatggtagtgccttggagacagtatctgtcatactaaagacaatc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tctttgatataggtgcatggtagtgccttggagacagtatctgtcatactaaagacaatc 273

                                                                       
Query: 122 aagatacatgacctacgtattcaggatagtgggatcatgtgacaaaaggaacaacggggc 181
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 272 aagatacatgacctacctattcaggatagtgggatcatgtgacaaaaggaacaacagggc 213

                      
Query: 182 agaagacttaa 192
           |||||||||||
Sbjct: 212 agaagacttaa 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no274_d08.g1 MSMg01no274_d08.g1 CHROMAT_FILE:
MSMg01no274_d08.g1 PHD_FILE: MSMg01no274_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:43 2005
         (141 letters)



>mm_chr8_49291661_49292201
          Length = 541

 Score =  197 bits (102), Expect = 2e-55
 Identities = 123/130 (94%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgtgggttcggttgctggaacactgtgagagactttggggggggccctcgagatgggt 60
           |||| |||||||||||||||||| ||||||||||||| ||||||||  ||||||||||||
Sbjct: 201 tctgagggttcggttgctggaacgctgtgagagacttgggggggggggctcgagatgggt 260

                                                                       
Query: 61  tctcttaaacaagaggaaattgagactagtaagtagtgtgtgggtcacagaacagtgcta 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 tctcttaaacaagaggaaattgagactagtaagtagtgtgtgggtcacagaacagtacta 320

                     
Query: 121 ggagccttca 130
           | ||||||||
Sbjct: 321 gaagccttca 330


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 541
Length adjustment: 8
Effective length of query: 133
Effective length of database: 533
Effective search space:    70889
Effective search space used:    70889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)