BAC Information

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BAC

Clone NameMSMg01-274G14
Chromosome8 (Build37)
Map Location 67,594,862 - 67,595,144
singlet/doubletsinglet
Overlap genenone
Upstream geneTll1, LOC100040989, Cpe, Sc4mol, Klhl2, LOC100040903, LOC619647, 3110005G23Rik, Trim75, Trim60
Downstream geneLOC665388, LOC665396, LOC100040949, LOC665405, Vaultrc-ps1, LOC100040967, March1, LOC100040986
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274G14.T7 (MSMg01no274_g14.b1)MSMg01-274G14.TJ (MSMg01no274_g14.g1)
ACCAG413146AG413147
length747748
length of high quality
(start - end)
290 (63 - 352)286 (432 - 717)
definitionCHROMAT_FILE: MSMg01no274_g14.b1 PHD_FILE: MSMg01no274_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:56 2005CHROMAT_FILE: MSMg01no274_g14.g1 PHD_FILE: MSMg01no274_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
GAAGTTACCCATCTTGCCCTTATTGTCTAGAAGACACTGAGTAAAATTAG
AAAAAGATTTTCTTCTTCTTCTTCTTTTTTTTTTTTTTAAAGTTTTTTTA
AAAAGAATAATAGCACTGAGGAGAAAGCAGGAAAACAACTCCAAGTAAAC
AGAATGATTGCCATGTCCTGTGAGGCTGAGTGATCACAGCTTCTATAAAA
CCACATTCCAATAGTTTAGCGGGGCAGTTTGCAAACTTGTTACAAAGACA
CATTGCTCCCTTCTCTTCCTGTCACATGATGTGCAATTTGGCCATTGAAA
GGTTCCTAATACCCCCCCCCCCCACCACAGTCTTGCCAATTAAATGCATG
AAACGTGACTAGGATTGAAAAAAGAAAGAATAGGGTTGTTAGCTGTAGGG
TTTGCTTACACAGTGCTTTTACGCGCTTCTCTATTCCCCAGTTTTAGAGG
GACGATCTCCCTGTTGCTCTGACTGTATGGGAAGGAGGAAAGGGGCTTGT
GTTGTTTGCATCTGGATGATCCTCAGAAGTCCCTTCGTTTATCTATGATG
CACACAGACAGCGGATGACATAAATGGAAGAAAGTCTGTTTAATGATGGA
ATGAAGGAATAGTTCTGAAGAAGAAAAACAATCATAAATTAGAATGTATG
CAGTCCAACACAAACTGTATTCATTTATGTAGTTTGTTTATTTTTAN
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATATGGAATGGCTGAGAAG
CACCTGAAAAAATGTTCACCATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACACTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGAAACACTC
CTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGT
CTGGCAGTTCCTCATATAATTGGACATGGTACTACTGAAGGATCCAGCAA
TATTCGNTCCNGTTCCTANATCAGNAACATGTCCCAACCGGTAAGAAGGA
CACATGCTCCACTATGTTCATAAAAAACATTATTTATAATAGGCGGAAGC
TGGAAAGAACCCAGATGCCCCTCAAAAGAGGAATGGATACAGAAAATGTG
GTACATTTACACAATGGAGTACTACTCGGCTACTTAAAAGAATGAATTTA
TGAAATTCCCAGGCAAATGGATGGACCTGGAGGGTATCATCCTGAGTGTG
GTAACCCAATCACAAAAGAACTCACATGGTATGTTCTCACTGACAAGTGC
ATATATGCTCAGAAACTTAGAATACCCAAGATATAAGGTACAATTTGCAA
AACACATGAAACTCAAGAAGAACGAAGACCAAAGTGTGGACACTTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_g14.b1 MSMg01no274_g14.b1 CHROMAT_FILE:
MSMg01no274_g14.b1 PHD_FILE: MSMg01no274_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:56 2005
         (290 letters)



>mm_chr8_67594655_67595344
          Length = 690

 Score =  499 bits (258), Expect = e-146
 Identities = 280/290 (96%), Gaps = 7/290 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgcccttattgtctagaagacactgagtaaaattagaaaaagattttcttcttcttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||     || ||||
Sbjct: 208 cttgcccttattgtctagaagacactgagtaaaattagaaaaagattt-----tt-ttct 261

                                                                       
Query: 61  tcttttttttttttttaaagtttttttaaaaagaataatagcactgaggagaaagcagga 120
           | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 t-ttttctttttttttaaagtttttttaaaaagaataatagcactgaggagaaagcagga 320

                                                                       
Query: 121 aaacaactccaagtaaacagaatgattgccatgtcctgtgaggctgagtgatcacagctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacaactccaagtaaacagaatgattgccatgtcctgtgaggctgagtgatcacagctt 380

                                                                       
Query: 181 ctataaaaccacattccaatagtttagcggggcagtttgcaaacttgttacaaagacaca 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctataaaaccgcattccaatagtttagcggggcagtttgcaaacttgttacaaagacaca 440

                                                             
Query: 241 ttgctcccttctcttcctgtcacatgatgtgcaatttggccattgaaagg 290
           ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 ttgctcccttctcttcctgtcacgtgatgtgcaatttggccattgaaagg 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)