BAC Information

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BAC

Clone NameMSMg01-274J16
Chromosome8 (Build37)
Map Location 72,464,902 - 72,465,174
singlet/doubletsinglet
Overlap geneGatad2a
Upstream geneLOC100041138, Slc18a1, Atp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561, LOC670593, EG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6
Downstream geneLOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274J16.T7 (MSMg01no274_j16.b1)MSMg01-274J16.TJ (MSMg01no274_j16.g1)
ACCAG413286AG413287
length741756
length of high quality
(start - end)		277 (36 - 312)205 (69 - 273)
definitionCHROMAT_FILE: MSMg01no274_j16.b1 PHD_FILE: MSMg01no274_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:10 2005CHROMAT_FILE: MSMg01no274_j16.g1 PHD_FILE: MSMg01no274_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATGA
CTTCCAGGACCATATAGTAAGTAAGTTCCCGTCTCAAAAACCGTAGGCGT
AGTCTAGTACTTCTCACATAGAATCATGTGCTGTCTGTGGGAGGACTGTC
CTCCGGTCCTGACTGTACATACTCCAATGGGCATGGCTGTGACCAAATAA
AACTATGCACCATGATGGGCCACCCGCCTTCAAGGCCATCTAGCATAGTG
TTTCTGGTTTTACACTGAGCAAAGGTATACCAGCCTAGCTTCCAGTATCT
TCTTAACACAGCAGTTATCATGCCTGCTTTCCCAAACACAACCCAGAGCA
CATCTACTTAGATTCCCGGACGTTACCAAAAGATATGCTTTCAGCAATTT
CCACTCTTAACCACGCCCCAAAACAAAATACTCTACTATGAGTAGGCAAG
CAGCTATCTGCAGGGTTGGCTTTTGCCTTTCCTCACACATGTGGAAATCT
AAAGGCAAAGAGGTCCCATTTTACTAAAAAGTGGTATGCTACAAAATCAA
CTCCTTCACAGAATGAAACTTTAACCCAGTTTTACTGCACAGCTCAGCCA
AGAACTTGTCGGAAAATAGAACCTGAGTTCCCTACAGCCAAGCGTGTGGA
AATCTACGGTCCATTGACGTTCTGCGCCCCATAGGAGCTACCCAACTTTA
ACTGGTCTCTGGGCCCTCTACAGTTGGTTACGCACCCTGTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCTACGCATCTGAGAAGGATCTTGAACTGATC
AGTTTCCCATTTGTTTTGTTTTTGAGACAGGGTGTCTCTTTCGACCAGGC
TTGCCTGAAACTCTGTGATCTATATGCCTCTGCCTATCCACTGCTGGTTT
GTTTTATGGGGTGCTGGGAACTTTACCAATGCTAGGATAGCGCTTTGTGA
ACTGAGATACAAACACTCCATTAAGTGATCCTCAGCCATGGTCCCTGAGC
CCTTATTAGGAGTCTCATTCTGTGCCCGGTCAGACGTAAAGTACGTTACC
GCATGAGATANAGTTCCCNATCCTTTNNCCTTCTATATCTTTCTTTCTCT
CTCTTTCTTTCTTCCTTCATAACTTACTTTAAATCTTTCTTGGTGGCTGT
CTTTCTCTCTTTCTTTCTTTCTTTCCTTCCCTCTTTCTTTCTTCCTTTTT
CTCTCTCTCTCTCTCCTCCCCTCTCTCTTTCTCCCTTCCTCCCCTTCTTT
CCCTTCCTTTCTTCCTTCCTTCCTTTCTCCCCTCTTTTCTTTTTCTCCCC
CTCTACTCCCTTCTTTTCCTTTCTTTCCCCAACATTTACAATACCCACCC
TTCCCACCCGCTTTCCTCCCCTTCCCCCCCCACCCCCATTTTACCCCCTT
TTCCCCCCGCTTTTCCCCCAATCCCCATTTCTCTCTTAGCCACATTTATC
TCTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_j16.b1 MSMg01no274_j16.b1 CHROMAT_FILE:
MSMg01no274_j16.b1 PHD_FILE: MSMg01no274_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:10 2005
         (277 letters)



>mm_chr8_72464698_72465374
          Length = 677

 Score =  513 bits (265), Expect = e-150
 Identities = 271/273 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatgacttccaggaccatatagtaagtaagttcccgtctcaaaaaccgtaggcg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatgacttccaggaccatatagtaagtaagttcccgtctcaaaaaccgtaggcg 264

                                                                       
Query: 65  tagtctagtacttctcacatagaatcatgtgctgtctgtgggaggactgtcctccggtcc 124
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagtctagtacttctgatatagaatcatgtgctgtctgtgggaggactgtcctccggtcc 324

                                                                       
Query: 125 tgactgtacatactccaatgggcatggctgtgaccaaataaaactatgcaccatgatggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgactgtacatactccaatgggcatggctgtgaccaaataaaactatgcaccatgatggg 384

                                                                       
Query: 185 ccacccgccttcaaggccatctagcatagtgtttctggttttacactgagcaaaggtata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccacccgccttcaaggccatctagcatagtgtttctggttttacactgagcaaaggtata 444

                                            
Query: 245 ccagcctagcttccagtatcttcttaacacagc 277
           |||||||||||||||||||||||||||||||||
Sbjct: 445 ccagcctagcttccagtatcttcttaacacagc 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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