BAC Information

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BAC

Clone NameMSMg01-274K12
Chromosome8 (Build37)
Map Location 119,618,510 - 119,618,828
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384868, LOC668233, Dynlrb2, Cdyl2, LOC100043053, 2310061C15Rik, 2610510J17Rik, BC060631, 1700030J22Rik, Gcsh, Pkd1l2
Downstream geneBcmo1, Gan, 4933407C03Rik, Plcg2, 4632417N05Rik, Hsd17b2, Mphosph6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274K12.T7 (MSMg01no274_k12.b1)MSMg01-274K12.TJ (MSMg01no274_k12.g1)
ACCAG413324AG413325
length732733
length of high quality
(start - end)
319 (372 - 690)232 (121 - 352)
definitionCHROMAT_FILE: MSMg01no274_k12.b1 PHD_FILE: MSMg01no274_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:14 2005CHROMAT_FILE: MSMg01no274_k12.g1 PHD_FILE: MSMg01no274_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGATCTCGGAGGCAGAGACAGGAGGATCCCTGAGGCCTTCTGCATAGCC
AGTCCATCGGGAACCCTTCAGTTCAACTCAGACTGATAAGAGGGAGGACC
CAAAGACTAAAATCCACACTGCATTTTTGAGAGCATAGGGTGGGAATTGG
GGGATTCTCGGTTCCTGCTGCTCGAAGTGACGCCCTCAGCCAGGAGAGCA
GCAGAAGGCTTCCACACTCCACCACATATACAGGAATCAAAACACCACAG
GACACCTCGTGAATATGTATGATCTCCCTGTCTTATGTAATTAAAGAAAT
TATAATACTAACCATGCTTCGGGATTGGAGACAGGGATCAGTCAGTAGAG
TATTCTACTTGCCAAAGAAAGACCCTGAGATCAACTCTCAGGACTCAGGG
TTAAAAAAAAGGGTGGGGGAGCCAAGCCAAGCCTGGTGCTGGTACTGCCT
GCTGTCTGCTGTCTGCTGTCTGCTGTCTGCTGCCTGCTGCCTGCTGCCTG
CTGCCTGCTGCCTGCTGCCTGCTGCCTGCTGCCTGCTGCATGTATACAAT
CCCAGTACTCAGGAGGTTGAGGCAGGCAGCTCCTTAGCTGATGGCCAACC
AGCTTAGCCCCTTGGTGAGTTCAAAAATAAATAGATAAGATGGATGGCAC
CAGAAAAGGCAACTGCCAAAGTTGTCCTCTGG
GAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTCCCAAAAAAGAATTCCAGGACAGCCGGGCTACACAGAGAAACC
CTGTCTCAGATTACAACCCCAAAAATAAATAAAAAATTATTTATTTCCAA
CATATCCGCTTCAAGAAGTGTAGTGAGACACAAACACTCAGCTGCCCTGA
AGCACACTAGAGCTTACATAATGCTTTTGAAAAGAAATTTATGGGCTGGA
GAGATGACTCAGTGGTTAAGAGCTCTGACTGCTCTTCCAGAGGTCCTGAG
TTCAATTCCCATTTTTTTACCATCTGTAGTGAGATCTAATGCCCTCTTCT
GAGTGNNTTACAGNTCANGCCACTCCTGTACGTAAATTAAAAAAAAAAAA
AGAAGGAAAGAAAAAAAAAAAAGAAGGACGTGATGGTACGTACACGCCTT
TAATCCCAGCACTCGAGAGGCAGAGGCAGGAGGATCTCTTGAGTTCAAGG
CCAACCTGGTCTACAAAGTGAGTTCCAGGACAACCAGACTTTGTCTCAAA
GTGGGGTTGGGGGAGGCTTTATGAAGAGACTCCAGAGCATAAAATACCCC
GGGCGTGGTGGCACGCGCCTTTAATCCCAGCACTTGGGAGGCATATGCAG
GCGGATTTCTGAGTTTGAGGCCGCTGGCCTACAGAGCGAGTTCCAGGATG
GCCAGAGCTCTACATATAAACCCTGTCTCGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_k12.b1 MSMg01no274_k12.b1 CHROMAT_FILE:
MSMg01no274_k12.b1 PHD_FILE: MSMg01no274_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:14 2005
         (319 letters)



>mm_chr8_119618506_119619224
          Length = 719

 Score =  617 bits (319), Expect = 0.0
 Identities = 319/319 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggattggagacagggatcagtcagtagagtattctacttgccaaagaaagaccctgagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggattggagacagggatcagtcagtagagtattctacttgccaaagaaagaccctgagat 264

                                                                       
Query: 61  caactctcaggactcagggttaaaaaaaagggtgggggagccaagccaagcctggtgctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 caactctcaggactcagggttaaaaaaaagggtgggggagccaagccaagcctggtgctg 204

                                                                       
Query: 121 gtactgcctgctgtctgctgtctgctgtctgctgtctgctgcctgctgcctgctgcctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gtactgcctgctgtctgctgtctgctgtctgctgtctgctgcctgctgcctgctgcctgc 144

                                                                       
Query: 181 tgcctgctgcctgctgcctgctgcctgctgcctgctgcatgtatacaatcccagtactca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 tgcctgctgcctgctgcctgctgcctgctgcctgctgcatgtatacaatcccagtactca 84

                                                                       
Query: 241 ggaggttgaggcaggcagctccttagctgatggccaaccagcttagccccttggtgagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  ggaggttgaggcaggcagctccttagctgatggccaaccagcttagccccttggtgagtt 24

                              
Query: 301 caaaaataaatagataaga 319
           |||||||||||||||||||
Sbjct: 23  caaaaataaatagataaga 5


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)