BAC Information

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BAC

Clone NameMSMg01-274L01
Chromosome8 (Build37)
Map Location 100,787,808 - 100,788,049
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546090, LOC636859, EG384885, LOC100041173, EG636915
Downstream geneCdh8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274L01.T7 (MSMg01no274_l01.b1)MSMg01-274L01.TJ (MSMg01no274_l01.g1)
ACCAG413349AG413350
length767731
length of high quality
(start - end)
250 (72 - 321)153 (124 - 276)
definitionCHROMAT_FILE: MSMg01no274_l01.b1 PHD_FILE: MSMg01no274_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:16 2005CHROMAT_FILE: MSMg01no274_l01.g1 PHD_FILE: MSMg01no274_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCGAGCTCCGCGGAAT
TCTCAGTTATTTTTCTTGAGACAAGGTGCTATATATATATATATATGAAA
GAAACTAGGCTGGCCTCTAACTCACATAGTTTCTGAGTTATGTGACCAGA
GATATGTACCACAAACATGCATGTTTATAAAACTCTTATTCAATTAAGTC
AATGTTATCAAACCATTCACAATGGAGAGTTTGTGGGGGCAATAAAATAT
GAATTATAATAAACCTTCAAGAGGAACAATGGCCTATACTTATAATCTAT
GCACCTAGGAGACTGATGCTGTATTTTCACTACAACAAAGCCAGTCTAGG
CTACACAGCAAGCTTCATAGAATGTTATAGGATACAGTATGATCCCATCT
CAAAGCAAAACAAAACATAAGAAACAAACTAATTTAGAACCTTAGCACAT
CTACATAACACGCACTATGTGTACATGCATGCGTGCACACTTGCGTGCGT
GTGTGTGCGTGTGTGTGTGTGTTGCGTGCTGCTTGTATGTCGTGCTTTCA
CTCACTTTCCCCTCTCCCTCCTCCCCTTTCCTCCTATCTTTTCCCCCCTC
TCTTAATCCCCCCTTTTCCCCCTTCCCCTTTTTCACCCTTTACCCCTTCC
TTTTTTCCCCCCTCTTCTTTCCCCCTCCACTTTTTCAATCCCTTTCCTTC
CTTTATTTTCCCCTTCCCTCTTTCTTTTTTCACCCTTCCCCTTTTTTTTT
CCCCATTTTTTACCACA
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCACAGGAAGAGCAAAAGAGTCAGCTAACTTG
AACCCTTGAGGCTCTTTCACCCTGAACCACTAACCAAAAAATATATACAG
GGTGGATCCAGCTCTCTCCATTCATATGTAGCAAATGTGTAGCTTGACTT
TCATGTGAGTCCTGAACAACTGGAATGGGGCTATGTCAAAAATGGCTGCT
TAGATATGGCGTATATTCTAAAAGTTGGGCTGCTTTGTCTGGCCTCATTG
GGAGAGAACATGCCCCTTGCATATACTTTCCAGTATGAGGGAGATACCTA
CGTTGATCCTTTTTTTTCCACACCCCCCCCCCAAAGGGTGGAACGGTTGC
GGGAGCCGATGACCATGTGAACAAAAAAAAAAAAATAAAGTGACCACTTC
CACTACTACATATTTACTCATGCACATTTTATCGATTTGCACTATTTCTC
ACTAAATCCTCTACTATGTACCATTCACCCTTCCCCTTTACCTCTCACGA
TGCATAACTCCGTGCATAGAATTGTCACACTGCTTACCATCCCAACATTT
GCAATCTGACTTTTCCCCGACACCCCCGCTACTACCATTTCCTCGTATCC
TGTTCCTCCCGTCCCTGTTTTCTGAACTATGATGTGCCTCGTACTACCCA
CCTCTACTATCCAGTTCCTTTTCCACCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_l01.b1 MSMg01no274_l01.b1 CHROMAT_FILE:
MSMg01no274_l01.b1 PHD_FILE: MSMg01no274_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:16 2005
         (250 letters)



>mm_chr8_100787600_100788249
          Length = 650

 Score =  437 bits (226), Expect = e-127
 Identities = 238/242 (98%)
 Strand = Plus / Minus

                                                                       
Query: 9   tatatatatatatatatgaaagaaactaggctggcctctaactcacatagtttctgagtt 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tatatatatatatatatgaaagaaactaggctggcctctaactcacatagtttctgagtt 391

                                                                       
Query: 69  atgtgaccagagatatgtaccacaaacatgcatgtttataaaactcttattcaattaagt 128
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 atgtgaccagaggtatgtaccacaaacatgcatgtttataaaactcttattcaattaagt 331

                                                                       
Query: 129 caatgttatcaaaccattcacaatggagagtttgtgggggcaataaaatatgaattataa 188
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 330 caatgttatcagaccattcacaatggagagtttgtgggggcaataaaatatgaattttaa 271

                                                                       
Query: 189 taaaccttcaagaggaacaatggcctatacttataatctatgcacctaggagactgatgc 248
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 270 taaaccttcaagaggaacaatggcctatacttagaatctatgcacctaggagactgatgc 211

             
Query: 249 tg 250
           ||
Sbjct: 210 tg 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)