BAC Information

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BAC

Clone NameMSMg01-275D01
Chromosome8 (Build37)
Map Location 52,731,273 - 52,731,864
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667517
Downstream geneLOC623872, LOC100040220, LOC623935, 1190028D05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275D01.T7 (MSMg01no275_d01.b1)MSMg01-275D01.TJ (MSMg01no275_d01.g1)
ACCAG413712AG413713
length765759
length of high quality
(start - end)
599 (46 - 644)234 (127 - 360)
definitionCHROMAT_FILE: MSMg01no275_d01.b1 PHD_FILE: MSMg01no275_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:53 2005CHROMAT_FILE: MSMg01no275_d01.g1 PHD_FILE: MSMg01no275_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCG
CGGAATTCTAGTGAATATACTTTATGAAAAAATTTTCTAAATTAAAAAAT
TGGTTAAAAACAACAACAACAACAAAAACCCTCAATACCTATTGAAATGA
TAGAAAAAAAATACCCTAAAAACTAAACCTGGGTTATTTTTATCATAGTG
CCAGAAGGTATAGATATTATTTCCATGTAAGTATTAATTGGTGGACTTAA
GGAAAGATGGTGTTTATGTTTGTAAAACTTTTCTTTGAAAAGTCTGTTAG
GAGCATTGGATTCTTTTAACATCTTCTGGTGTATGAACTAAGTCAAGACA
AGCAGGCTACAGGAGCACATTATTTTCCTAACCAGAGCCAATCCATGCAC
ATAATTTGCTTATTTGGTCTATTTCTGGAACTTCATTTAGAAATGTACCT
CATGCAGTGAAACATCTTCTTCCCTAAATCAAGACACTGTCTAAACAAAA
CAAAACTATTTAAGGCTAAAGAACACAATAAGCTTGGAAACATGGTCTGT
TACAGAATAAATGGTACAGTGATAGGTCACAGTGGCCTGTGCTACCCATA
AGAAAATGACCCCTGGTACAAGAAAGAGACTATGATGTTTCTATCTAGGT
TGGATATTTTTAAAGAAAGGAAATGACAATTTTGCTGTGATGCTATACAC
AAAAGAAACTGATATATATATATATATATGTGCGTGTGTGTGTGTGATTA
TGTATATGTACATAT
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTTAGTGATAATTTTATTGAGTATT
TTTGCATTGATATTCTTTGGCCCATTGGTCTGAAGTTCTCTATCTTTGTT
GGGTCTTTTTGTGGTTTAGTATCAGAGTGATTGTGGCTTAATAGAATGAA
TTGGGTAGAGTACCTTCTGCTTCTATTGTGTGGAATAATTTTTGAAGAAC
TGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACTCAT
CTAGTCCTGGGCATTTTTTGGTTGGGAGACTATTAATGACTGCTTCAATT
TCGATAGTTGTTATTGGACTGCTCACATCACTAACCTGATCCTGATTTAA
TTTTGTTACCTGGTATCTGTCTAGAAATTTGTCCATTTCATCCCAGTTTT
CCAGTTTTGTTAGAAGGATCTGATGGTGTTTTGGATTTCTTCAGGATCTG
TTGTTATGTCTCCCTTTGCATTTCTGATTTTGTTCATTAGGATGCTGTCC
CTGTGCCCTCTAGTTAGTCTGGCTAAGGGTTTATCTATCTTGTTGATTTT
CTCTAAGAACCAGCTCCTCATTTGCTTGATTAGATGAATATTTCCTTCTT
GTTTCCTCTTGATTGATTTCGCCACTGAGTTTGATTATTTCCTGGCATCT
ATCCTCTTGAGTGAATTTGCTTCCTTTTTTTCTAGAGCTTTTAGGCCTGT
TGTCCAGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_d01.b1 MSMg01no275_d01.b1 CHROMAT_FILE:
MSMg01no275_d01.b1 PHD_FILE: MSMg01no275_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:53 2005
         (599 letters)



>mm_chr8_52731066_52732064
          Length = 999

 Score = 1085 bits (561), Expect = 0.0
 Identities = 585/593 (98%), Gaps = 2/593 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattctagtgaatatactttatgaaaaaattttctaaattaaaaaattggttaaaaaca 67
           ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattctagtgaatatattttatgacaaaattttctaaattaaaaaattggttaaaaaca 267

                                                                       
Query: 68  acaacaacaacaaaaaccctcaatacctattgaaatgatagaaaaaaaataccctaaaaa 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 acaacaacaacaaaaaccctcaatacctattgaaatgatagaaaaaaaataccctaaaaa 327

                                                                       
Query: 128 ctaaacctgggttatttttatcatagtgccagaaggtatagatattatttccatgtaagt 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 328 ctaaacctgggttatttttatcatagtgccagaaggtatagatattatttccatgtaagc 387

                                                                       
Query: 188 attaattggtggacttaaggaaagatggtgtttatgtttgtaaaacttttctttgaaaag 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 attaattggtggacttaaggaaagatggtgtttatgtttgtaaaacttttctttgaaaag 447

                                                                       
Query: 248 tctgttaggagcattggattcttttaacatcttctggtgtatgaactaagtcaagacaag 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tctgttaggagcattggattcttttaacatcttctggtgtatgaactaagtcaagacaag 507

                                                                       
Query: 308 caggctacaggagcacattattttcctaaccagagccaatccatgcacataatttgctta 367
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 caggctacaggcgcacattattttcctaaccagagccaatccatgcacataatttgctta 567

                                                                       
Query: 368 tttggtctatttctggaacttcatttagaaatgtacctcatgcagtgaaacatcttcttc 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tttggtctatttctggaacttcatttagaaatgtacctcatgcagtgaaacatcttcttc 627

                                                                       
Query: 428 cctaaatcaagacactgtctaaacaaaacaaaactatttaaggctaaagaacacaataag 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 cctaaatcaagacactgtctaaacaaaacaaaactatttaaggctaaagaacacaataag 687

                                                                       
Query: 488 cttggaaacatggtctgttacagaataaatggtacagtgataggtcacagtggcctgtgc 547
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 688 cttggaaacatggtctgttacagaataaatggtgcagtgataggtcacagtggcctgtgc 747

                                                                
Query: 548 tacccataagaaaatgacccctggtacaa-gaaagagactatgatgtttctat 599
           ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct: 748 tacccataagaaaatgacccctg-tacaaagaaagagagtatgatgtttctat 799


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)