BAC Information

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BAC

Clone NameMSMg01-275I20
Chromosome8 (Build37)
Map Location 53,610,588 - 53,610,878
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC623872, LOC100040220, LOC623935, 1190028D05Rik
Downstream geneLOC676688, Aga
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275I20.T7 (MSMg01no275_i20.b1)MSMg01-275I20.TJ (MSMg01no275_i20.g1)
ACCAG413971AG413972
length755753
length of high quality
(start - end)
322 (40 - 361)291 (70 - 360)
definitionCHROMAT_FILE: MSMg01no275_i20.b1 PHD_FILE: MSMg01no275_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:18 2005CHROMAT_FILE: MSMg01no275_i20.g1 PHD_FILE: MSMg01no275_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TTGTTTTTAACAGCTGAGTAGTACTCCATTGTGTAAACATATCACATTTT
CTGTATCCATTCCTCTCTTCAGGGAAATCTGGGTTCTTTTCAGCTTCTGG
CTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTATCA
CATGTTGGAGAATCTTCTGGTATATGCCCAGGAGTAGTATAGTTGGTTCC
TCAAATAGTACTCTATCCATTTTTTTAAGGAATTGCCAAACTGATTTCCA
GAGTGGTTGTACCAGCTTGCAATCCCACAAGCAATAAGGAGTGCCTCTCT
TTCTCTACATCTTCTCCAGAACCTGCTGTCACTAGAATTTTTGATCTTAG
CCATTCTTACTGGTGTGAGATAGAATCTCACAGTTGTTTTGATTTCTATT
TCCCTAATGACTAATGAACAATGTTGAACATTTCTATATGTGTTTATCAG
CCATTTGATATTCCTCAGTTGAGAATTCTTTGTTTAGTTCTGTACCCCAT
TTTTTTCATAGGGTTATTTGGTTCTCTCTAACTTGTAGTGTTCTTTGTAT
ATACCAGATATTAGCCCTCTATTGTTTTAGGATTGGTAAAAATATTTTCC
TAATCTGTTGGATGCCGTTTTGTCCTATTGACAATGTCTTTGCCTTACAG
AAGCTTTGCAACTTTTTGAGGTCCCATTTTAAATACTTGATCTTAGAGCA
TAAGC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTCACTGATCAATTAATTCACTCTTGAAATA
AGGAATTACAGAGAAAGGAAACATAAGACAACTCTCTGATTTAATTGTCT
AATTGTATAGTTGGTCTAGAACTCCAGATTCTGAGACAGTTAAGTAACAC
AGTACACTTAAACATTTATTTTACCTTTCATTCAAATATATTAGGACCAT
CTAGAGACCGTGATATTCGGGGATCCATCCCATAATCAGCCTCCAAACAG
TGACACCATTGCATACACTAGCAAGATTTTGCTGAAAGGACCCTGATATA
GCTATCTCTTTTTTTACTACCCCCCCCGCCTAGCAAACACAGAAGTGGGT
GCTAACAGTCAGCTATTGGATGGATAACAAGGCCCCCAATGGAGGAGCTA
GAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACA
ACAATATGAACTAACCAGTACTCCCCGGAGCTCGTGTCTCTAGCTGCATA
TGTATCAGAAGATGGCCTAGTCGGCCATCAGTGGAAAGAGAGGCCCATTG
GTCGTGCAAACTTTGTATGCCTGAGTACAGGGGAATGCCAGGGTCAAGAG
GTGGGAGTGGGTGGGTAGGGGTATGGGGGACTTTTCCCCCTCTTTTCTTT
TTTCCGCGCCCCTTTCCCTTCCCCTCTTATTTTCTAATTTCCTTCTTACT
CCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_i20.g1 MSMg01no275_i20.g1 CHROMAT_FILE:
MSMg01no275_i20.g1 PHD_FILE: MSMg01no275_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:18 2005
         (291 letters)



>mm_chr8_53610505_53611195
          Length = 691

 Score =  480 bits (248), Expect = e-140
 Identities = 281/292 (96%), Gaps = 2/292 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcactgatcaattaattcactcttgaaataaggaattacagagaaaggaaacataagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ctcactgatcaattaattcactcttgaaataaggaattacagagaaaggaaacataagac 315

                                                                       
Query: 61  aactctctgatttaattgtctaattgtatagttggtctagaactccagattctgagacag 120
           |||||||||||||||||  ||||  |||||| ||||||||||||||||||||||||||||
Sbjct: 314 aactctctgatttaattccctaaaagtataggtggtctagaactccagattctgagacag 255

                                                                       
Query: 121 ttaagtaacacagtacacttaaacatttattttacctttcattcaaatatattaggacca 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ttaagtaacacagtacatttaaacatttattttacctttcattcaaatatattaggacca 195

                                                                       
Query: 181 tctagagaccgtgatattcggggatccatcccataatcagcctccaaacag-tgacacca 239
           || |||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 194 tcgagagactgtgatattcggggatccatcccataatcagcctccaaac-gctgacacca 136

                                                               
Query: 240 ttgcatacactagcaagattttgctgaaaggaccctgatatagctatctctt 291
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 135 ttgcatacactagcaagattttgctgaaaggaccctgatatagctgtctctt 84


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)