Query= MSMg01no275_k04.b1 MSMg01no275_k04.b1 CHROMAT_FILE:
MSMg01no275_k04.b1 PHD_FILE: MSMg01no275_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:24 2005
(687 letters)
>mm_chr8_68091354_68092442
Length = 1089
Score = 1067 bits (552), Expect = 0.0
Identities = 578/590 (97%), Gaps = 9/590 (1%)
Strand = Plus / Minus
Query: 5 gaattctttaatgtattcaactaaaagatgctttaaaaataaagaatttgtttaatatcc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 gaattctttaatgtattcaactaaaagatgctttaaaaataaagaatttgtttaatatcc 524
Query: 65 aaagaatataagctcctataataaaataaagctatatggtttctttttttctataggctt 124
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 aaagaatataagcttctataataaaataaagctatatggtttctttttttctataggctt 464
Query: 125 cccttagtatagctttgaaatcctaataatcatgtaaagttgcattaaacaaattccaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 cccttagtatagctttgaaatcctaataatcatgtaaagttgcattaaacaaattccaaa 404
Query: 185 taagtcagaattatttttctgttatgagttttactatcttttcttccattaaatacctaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 taagtcagaattatttttctgttatgagttttactatcttttcttccattaaatacctaa 344
Query: 245 atatatgatatgcacttgtataatgcatataataaaagaa--tatcagtatctcaattaa 302
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 343 atatatgatatgcacttgtataatgcatataataaaagaatctatcagtatctcaattaa 284
Query: 303 attttaagaaatttaagtttttaataactattaacactattatttgcacactacttcttt 362
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 283 attttaagaaatttaagtttttaataactattaacactattatttgtacactacttcttt 224
Query: 363 caataagacataaaccttgaattaattaattaattaattaattgatgtgactaggtataa 422
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 223 caataagacataaaccttg----aattaattaattaattaattgatgtgactaggtataa 168
Query: 423 tagtgtagccatgacacttgggagagaagatttgatgctgaagaccatctctaagctata 482
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 tagtgtagccataacacttgggagagaagatttgatgctgaagaccatctctaagctata 108
Query: 483 tagtgagtttgagagcagtccaggatatatgagaccctatgtcaaaaaaaaggggggggg 542
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 107 tagtgagtttgagagcagtccaggatatatgagaccctatgtc--aaaaaaggggggggg 50
Query: 543 agaagaaaagaaagtaaaagaaaacctgaataaagaagatcaggtacaaa 592
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 -gaagaaaagaaagtaaaagaaaacctgaataaagaagatcaggtacaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1089
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1079
Effective search space: 730483
Effective search space used: 730483
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no275_k04.g1 MSMg01no275_k04.g1 CHROMAT_FILE:
MSMg01no275_k04.g1 PHD_FILE: MSMg01no275_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:24 2005
(286 letters)
>mm_chr8_67936238_67936922
Length = 685
Score = 538 bits (278), Expect = e-157
Identities = 284/286 (99%), Gaps = 1/286 (0%)
Strand = Plus / Plus
Query: 1 attccaggcagatcaatagcttaaatgagaagaggccacactttaaaacccttagcaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attccaggcagatcaatagcttaaatgagaagaggccacactttaaaacccttagcaaaa 260
Query: 61 tattggagcaaaatttgtgatttcaccatgaaggagtctgctttaaaggagataatgctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattggagcaaaatttgtgatttcaccatgaaggagtctgctttaaaggagataatgctt 320
Query: 121 atactttaataaacaagccaaaatggaaaaggaattgataattttatttaaaatcaaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atactttaataaacaagccaaaatggaaaaggaattgataattttatttaaaatcaaatt 380
Query: 181 acagttttctgcatttcacaagaaagtactgtaaaatgaaattgtattctgagaaaaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagttttctgcatttcacaagaaagtactgtaaaatgaaattgtattctgagaaaaaaa 440
Query: 241 aacttccaaaaaattgttgtcatctagggtgtggaaagaataagag 286
| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 a-cttccaaaaaattgttgtcatccagggtgtggaaagaataagag 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 685
Length adjustment: 9
Effective length of query: 277
Effective length of database: 676
Effective search space: 187252
Effective search space used: 187252
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
