Query= MSMg01no275_m08.b1 MSMg01no275_m08.b1 CHROMAT_FILE:
MSMg01no275_m08.b1 PHD_FILE: MSMg01no275_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:34 2005
(321 letters)
>mm_chr8_25974536_25975255
Length = 720
Score = 598 bits (309), Expect = e-175
Identities = 315/317 (99%), Gaps = 1/317 (0%)
Strand = Plus / Minus
Query: 4 ggaattctctatttaaatcaaaatgaattcagtcattcttggctaagataaaaaagtaaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ggaattctctatttaaatcaaaatgaattcagtcattcttggctaagataaaaaagtaaa 460
Query: 64 tattataacctagcacactaatttcataattagaagaaaatcatttacactaacattcaa 123
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tattataacctagcaca-taatttcataattagaagaaaatcatttacactaacattcaa 401
Query: 124 actaaccctaggtgtgcaattctcatggtgtctgccactgcaatgccggctactcacctc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 actaaccctaggtgtgcaattctcatggtgtctgccactgcaatgccggctactcacctc 341
Query: 184 ccaactgtcaatatcctacgacaaaaaggtcagcatcgctgtggtctggcaagcatggca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 340 ccaactgtcaatatcctacgacaaaaaggtcagcatcgctgtggtctggcaagcacggca 281
Query: 244 agtatctctgtctttaaatagctattgagaaaaagttataagatcacttattttcatcca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 agtatctctgtctttaaatagctattgagaaaaagttataagatcacttattttcatcca 221
Query: 304 aagaaagccacatttta 320
|||||||||||||||||
Sbjct: 220 aagaaagccacatttta 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 720
Length adjustment: 9
Effective length of query: 312
Effective length of database: 711
Effective search space: 221832
Effective search space used: 221832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no275_m08.g1 MSMg01no275_m08.g1 CHROMAT_FILE:
MSMg01no275_m08.g1 PHD_FILE: MSMg01no275_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:34 2005
(244 letters)
>mm_chr8_25840488_25841131
Length = 644
Score = 433 bits (224), Expect = e-126
Identities = 239/244 (97%)
Strand = Plus / Plus
Query: 1 agaagaaaaccgaagctgtgaagacaccggagatgaatttcagatgctattctgcatggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaagaaaaccgaagctgtgaagacaccggagatgaatttcagatgctattctgcatggg 260
Query: 61 tgtttctggttgtgttcagcgaatcatttgacgtggaaattgatgatatttagattactg 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtttctggttgtgttcagtgaatcatttgacgtggaaattgatgatatttagattactg 320
Query: 121 tgcagctcatgtccatggtgacggggactgggagatctgataaattaaaggtgtgttaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcagctcatgtccatggtgacggggactgggagatctgataaattaaaggtgtgttaaa 380
Query: 181 gccaggcatcactatgaaaattgggtctggatagtgaagggagaactgggaatgtttgtt 240
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 381 gccaggcatcactaggaaaattgggtctggatagtgaagggagagctgggaatgcctgtt 440
Query: 241 tgat 244
||||
Sbjct: 441 tgat 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
