BAC Information

Click to search

BAC

Clone NameMSMg01-276D12
Chromosome8 (Build37)
Map Location 85,072,329 - 85,072,615
singlet/doubletsinglet
Overlap genenone
Upstream geneInpp4b, LOC671182, Il15
Downstream geneEG666564, LOC675800, EG666289, Zfp330, Rnf150, LOC100039688, Tbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276D12.T7 (MSMg01no276_d12.b1)MSMg01-276D12.TJ (MSMg01no276_d12.g1)
ACCAG414463AG414464
length737743
length of high quality
(start - end)
359 (379 - 737)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no276_d12.b1 PHD_FILE: MSMg01no276_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:07 2005CHROMAT_FILE: MSMg01no276_d12.g1 PHD_FILE: MSMg01no276_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:07 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAATCAGAGGAGGATTAAACATGTCAGAAGGCAAAGAAGAGATAT
TCCTGTAGAAAAGGAGATTTAGTGCAAATCCTGGGGTTGGTAGCAGACTC
ATCAAATGTTAGAGTTATGTAACTCGGGGAGGCATTTAACCCCACTCTGC
ATCTGAAGATCATTAGCATTATTACTTAGGTCTGGACTGACAGGTGGTGG
CAATAGTTGGAAGCCTTTAGTGTAACAGCCAAGCCACTTCTTGATAGGCA
ACTTCTACCAGGTGACAGGTTAAGCCCACAAATGGCTTGAGGTAATAGTC
CTAAAATTGAGTTTATGATGTAACCATATTTCTCACCTCAGAAAGGATTA
ATGCTCAAAATGCAAAATAAATAGAGTGTAACTCATTTTTGTGAAGACAA
AGTATGCACAAAATATATTATAAATATAATATATTTATATTACATTTCCC
TCTATAATTTTGAGTTTCAAGTAGGGCATTTAAATTATAGTTGATTTTGA
ATCATGATTTTATGCTGTATTTTTGGCCTTTTGGTTGTTTATTTGTTTGT
CTGTGATAGGTTCCCATATATCACAGGCTGTCTTCAAACTCACTGTGTCC
AAGGATGACTGATCTTGAACTTCTGATCCTCCTGCTCTTACCTTCTGAGC
TGTTATGACACTCTCCTGCCTTCACACCCATTTGTGC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAATAGTTGGGATAGCTTTTGGTC
TCCCTGTAAGAAATGAAATCATTGACAACAAATCAAGTAGATATTAGAAT
TGCTTTTTATCTTCCCAGAGATTTATGCTGCAAATTAATCCATATTTACT
TTACTAAAAGTGGGAACATATGTTTTGTAGTTATAAGAAAATACATTTGC
ATTTCATAACCAAAAAAAGAATTATAGATATGGCTAATTTCATATATAAC
AATTTGACCAAAAATGTATTAAACATTTATTTCACAATCAAATATAGATC
ATTCCTTCATCTATTTTTATTACCCCCACCCACAACTGGGAATGCCTATC
TTAGCAATTGCTAACTTCTAAAACATGCTAGAGAGACAAGGGAGATGCTT
TTACATTATTAACAAATAATACTTATAGAATTCTTGTAAGTTCAAATAAC
TGCATGTAGCCTGGGCTATAACCTCCATGCTAGATTTAGATTTCCATATA
ATCACACTCTTCTTACATGGTTACTCTTTAGTTTCTCATTGTAAGTTTTT
GTTATGTGTATGTGAAAGTATATACAAGGGGTAGGGAGATGGATCAGTAG
GAAAATTGCCTACTACCCTTGTATGAGAACCTGAGTTAGGATTTCCAACA
CCAACATAAAAGCCTAGTGTCATGGCACACATGTGCAATGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_d12.g1 MSMg01no276_d12.g1 CHROMAT_FILE:
MSMg01no276_d12.g1 PHD_FILE: MSMg01no276_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:07 2005
         (287 letters)



>mm_chr8_85072129_85072815
          Length = 687

 Score =  555 bits (287), Expect = e-162
 Identities = 287/287 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taatagttgggatagcttttggtctccctgtaagaaatgaaatcattgacaacaaatcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taatagttgggatagcttttggtctccctgtaagaaatgaaatcattgacaacaaatcaa 260

                                                                       
Query: 61  gtagatattagaattgctttttatcttcccagagatttatgctgcaaattaatccatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtagatattagaattgctttttatcttcccagagatttatgctgcaaattaatccatatt 320

                                                                       
Query: 121 tactttactaaaagtgggaacatatgttttgtagttataagaaaatacatttgcatttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactttactaaaagtgggaacatatgttttgtagttataagaaaatacatttgcatttca 380

                                                                       
Query: 181 taaccaaaaaaagaattatagatatggctaatttcatatataacaatttgaccaaaaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaccaaaaaaagaattatagatatggctaatttcatatataacaatttgaccaaaaatg 440

                                                          
Query: 241 tattaaacatttatttcacaatcaaatatagatcattccttcatcta 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattaaacatttatttcacaatcaaatatagatcattccttcatcta 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)