Query= MSMg01no276_j08.b1 MSMg01no276_j08.b1 CHROMAT_FILE:
MSMg01no276_j08.b1 PHD_FILE: MSMg01no276_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:33 2005
(278 letters)
>mm_chr8_98580615_98581292
Length = 678
Score = 482 bits (249), Expect = e-140
Identities = 266/275 (96%), Gaps = 6/275 (2%)
Strand = Plus / Plus
Query: 4 ggaattcttttgcttgtgccttccctcaagaatcaattttggtttgggtgtctagacctg 63
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 204 ggaattcttttgcttgtgccttccctcaagaaccaattttggtttgggtgtctagacctg 263
Query: 64 gaagtggcatatacatctttgattggtcagtcgtatgacatcacctagaggcataggttt 123
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaagtggtatatacatctttgattggtcagtcgtatgacatcacctagaggcataggttt 323
Query: 124 agtagaatcataagaaccagagcttttccagccatgtcatagaactcagtcattgaaatg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agtagaatcataagaaccagagcttttccagccatgtcatagaactcagtcattgaaatg 383
Query: 184 atttatcttaaggatgacactataaatgaattgtgtgtgtgtgtgtgtgtgtgtgcattt 243
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 384 atttatcttaaggatgacactataaatgaattgtgtgtgtgtgtgtgtg------cattt 437
Query: 244 gtgaaaattcacaagagacttgtataatactacac 278
||||||||||||||||| |||||||||||||||||
Sbjct: 438 gtgaaaattcacaagagtcttgtataatactacac 472
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space: 179961
Effective search space used: 179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no276_j08.g1 MSMg01no276_j08.g1 CHROMAT_FILE:
MSMg01no276_j08.g1 PHD_FILE: MSMg01no276_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:33 2005
(289 letters)
>mm_chr8_98756367_98757055
Length = 689
Score = 383 bits (198), Expect = e-111
Identities = 216/222 (97%)
Strand = Plus / Minus
Query: 68 ggtttcttcccttctaaatcaatttcagccattgtgtttgcttagtttgcatcaaacaga 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ggtttcttcccttctaaatcaatttcagccattgtgtttgcttagtttgcatcaaacaga 430
Query: 128 gttagtgcataacaaatcttcaatgaaaattaatgaatattagagaattctacagcactc 187
||| ||||||||||| || |||||||||||||||||||||||||| |||||||| |||||
Sbjct: 429 gtttgtgcataacaagtcctcaatgaaaattaatgaatattagaggattctacaacactc 370
Query: 188 aattgctcaagcaatgataactaatcaaaatatatagaaaaattaataagtaagggcttg 247
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 369 aattgctcaagcaatgataactaatcaaaatatatagaaaaattaaaaagtaagggcttg 310
Query: 248 gcacatttatatagtgtagaacatagtttttccctttcaaca 289
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcacatttatatagtgtagaacatagtttttccctttcaaca 268
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
