BAC Information

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BAC

Clone NameMSMg01-277C02
Chromosome8 (Build37)
Map Location 96,390,060 - 96,390,296
singlet/doubletsinglet
Overlap geneGnao1
Upstream geneAytl1, Capns2, LOC100040752, Slc6a2, EG244595, LOC382044, Es1, LOC676523, Ces3, Es22, AU018778, Ces1, 2310039D24Rik, Ces7
Downstream geneAmfr, Nudt21, Ogfod1, Bbs2, Mt4, Mt3, Mt2, Mt1, Nup93, LOC100041555, Slc12a3, Herpud1, EG434339, AI451557, Cpne2, 2310065K24Rik, Rspry1, Arl2bp, Pllp, Ccl22, Cx3cl1, 1700121C10Rik, Ccl17, Ciapin1, LOC664947, Coq9, Polr2c, Dok4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277C02.T7 (MSMg01no277_c02.b1)MSMg01-277C02.TJ (MSMg01no277_c02.g1)
ACCAG415118AG415119
length752779
length of high quality
(start - end)
237 (131 - 367)223 (75 - 297)
definitionCHROMAT_FILE: MSMg01no277_c02.b1 PHD_FILE: MSMg01no277_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:12 2005CHROMAT_FILE: MSMg01no277_c02.g1 PHD_FILE: MSMg01no277_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGACCAATCACCAGGACATTATTGATACCAGATCACAAGGAGGAC
TTGACCAGCAAAGAAGAAAATAAACTCAGTAGATGACTTGGCCACCAACA
GTGTCTGCCCCCATCTTGAGGAGTGAAAAGGAGCTACCCTGAGAAGAAGG
ATGTAGGTGTTGTAGGAAGGGCGGATAGCTCGAGCGGATGCACCTAAGCA
TGGAAGACATAGGAACCTGGGGGCTGATGAGTTGGCCACACTGTGGCAGC
AAATGGAAGCCTTAAGATGGAACCGTGACTTCATACCTTGCTAGTGACCT
TGGATGATTGAAGGGCTTCTATGTCACCCCAACTCCCGAAAGGAATTTGT
AAAGAACTTGTGGCTTGGCACGTAGAAATAGAAATAACGCTTGTGGGGAG
AATGGGATGTTGTCATTGTACCTCTGTGTGGCTGATGCCAGATGCAGTGA
GCTGACTCTGGGTAAAAAGCGAAGCAAGGCAGAGCTTTTTTTTTGTAAAA
TNCTAAGCCAAAAAATTGATACCGATTTGGCCGTTCCTGGCCGGGGTTTT
CCTTCCCAATCCCCGGATTTAAGAACCTCTTCTTGTTTTTGACGAATAAG
CTCTTGTCCNCTGCTCCCCCCCCTCCCTCTGGTAGCTAGAAAAATTTATA
GGGTGTGTTTTAATATTTCTCGTTAAAATGGCTTGCTTTATTCTTTCTCC
TG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTTGTTTTCATGTAGCTTAATCACT
TGAGCTTATGACTCTAAATATTTACCTGCCCACTGGTCAATTGTGCCAAA
AAGAAAGGCCTTGCCGGGTGGTGCTGGTGCACGCCTTTAATCTCAGCACT
CGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCCAGGACAGCCAGGGCTAC
ACAGAGAAACCTGTCTTGAAAAACAAACAACAAACAAACAAACAAACAAA
CAAAACAAAAANTTTTTTTTTTTTTAATTAATAAAAAATTAATAAATTTT
TCTTTTTCCTACCCCATATCACATCACATTTTTTCCCTTTCATTCCCATA
AAAACCAACCCTCCGCCTTATAATCCTACTATATCTTCTCACTACTCTTC
TTATTCTTTATTTATGCTTTATTTACATCCTACCTATTATTAACCCCATA
ACTATTTAATGTCCACTCATTATTCCCTTATATTATTAAAATAACTTTCG
ATTACTCTCTTCTACCTCATATTTTATTACATTAATCTCATTCTTTCTAA
ATAACCTACCATCTAATATAGATCCCTCCTCTTTCCTTCCCATTTCCCCT
TTCCGCTCATTCCTTTTCTCTCCTTATTCCCCCCCTATATTCCCACTCCC
TTAACCATTGTCCCCGTCACAACACACTTTTTCTCTCCCCCCACCCCCCC
ATAAATTTTACCCTCCACCACCCTTATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_c02.b1 MSMg01no277_c02.b1 CHROMAT_FILE:
MSMg01no277_c02.b1 PHD_FILE: MSMg01no277_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:12 2005
         (237 letters)



>mm_chr8_96389860_96390496
          Length = 637

 Score =  435 bits (225), Expect = e-126
 Identities = 234/237 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatgacttggccaccaacagtgtctgcccccatcttgaggagtgaaaaggagctaccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatgacttggccaccaacagtgtctgcccccatcttgaggagtgaaaaggagctaccct 260

                                                                       
Query: 61  gagaagaaggatgtaggtgttgtaggaagggcggatagctcgagcggatgcacctaagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 gagaagaaggatgtaggtgttgtaggaagggcggatagctcgagcggatacacctaagca 320

                                                                       
Query: 121 tggaagacataggaacctgggggctgatgagttggccacactgtggcagcaaatggaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggaagacataggaacctgggggctgatgagttggccacactgtggcagcaaatggaagc 380

                                                                    
Query: 181 cttaagatggaaccgtgacttcataccttgctagtgaccttggatgattgaagggct 237
           ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 381 cttaagatggaaccgtgacctcataccttgctagtgacgttggatgattgaagggct 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)