BAC Information

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BAC

Clone NameMSMg01-277L19
Chromosome8 (Build37)
Map Location 114,355,980 - 114,356,153
singlet/doubletsinglet
Overlap geneCfdp1
Upstream geneSf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1, Ldhd, Zfp1, Ctrb1, Bcar1
Downstream geneTmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040, Cntnap4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277L19.T7 (MSMg01no277_l19.b1)MSMg01-277L19.TJ (MSMg01no277_l19.g1)
ACCAG415554AG415555
length732774
length of high quality
(start - end)
---154 (502 - 655)
definitionCHROMAT_FILE: MSMg01no277_l19.b1 PHD_FILE: MSMg01no277_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:56 2005CHROMAT_FILE: MSMg01no277_l19.g1 PHD_FILE: MSMg01no277_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGTGCTTTTACCAGATTCATAATTGTCAAATAATATTACGATGA
TTTAATGTTTAAATGATGTTATTACCATATATTCGGAGTAAATACATTTT
TAGAATTAGGTACGTCTATTTATTTTTTTTGTTTCCTTGTGGCTTTTTCG
AGACAGGGTTTCTACTGTGTATTCCTGGTGGTGTTGGAAATCAGTTTGTA
TGCGATTATGGCCTCGTATCTGAAAAATGGAGTGTTTCTGCATGATAAGA
GGGTGGGATTATGGGCGTTGCTTATTATTGTTCTGCAAGGCAATTATTTT
TTGATATGGCACAGAAGTTTTTTGTTACATGCCCGCCCTGACAATACTGT
AATAACAGGTGAAAAACCTTGCTGATACTTGATAGGAATAAAATTTTATT
TATGGACCTTGTGTGGAAATGAATGGAGCTAAGATTGAGATGGCTGTTGT
GGTCTATATGAATTGAGCATTAGATAGTGGCTTGAAGGAGATATTTGAGG
TGGATTGTTTGGAGTCTTGATTGTTCTCTGCTTGCTCTTACAACTTTTGC
GTATATTTACTGATTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAT
GGATATTCTACCTGTGACATAAAAATTATTGG
NNNNNNNNNNNNNNNNNNNGGGGCCCCCCACCCCCCCGAATACNNNNNCC
TATGATATGGGTAGCCTGGCGGCCGCCTGGTCTTCCCGAGGGGGNGAANN
ANAGAAGGATTTCCAAAATCAAGGGCNGNGNCNTTCCAGGNGANCGGGGN
TGNCNAGNNGGAGGTTTTCCCAAGATTANATTNTNAGGGAAGAAAGGNTG
GAGGNNTGGAGTANAGAGTNANTTTANAGNNANTTGGANAGAANTNTNTT
AGGTGANAGTNATAAAANNNNATNNAGTTTGAAGGAGTTTGGTTAATGGT
TTGTAGGAGNANATGGGANAGGAAATGTGTGANAGNNTGTTTGGAAAATA
AANANAATNTGTTGGTAGTTTTTTTTTTAGNATTGNTGTGTAGAATNNGG
AGAGTTGAATTTTTTTTTTAACCGCCCACACCTCAGTTTTAATCCTTAGG
GATGTAAATGAGCTTCCTGTCAGGATGACAAAAGATGTAGGCAAACCTTC
CCAGTATCAGCTATAAGCAGCCATAGGTAAGCCTTGGGCTGTTGCTGGTG
TGTCTCCGCTGTAGCTGGACGTCAGTTTGTCTCAGCTTGGCTCCACACTT
AACTTTGTGCCACTTACAGAACACACAGTATTAAGTACAGCAGAGAAGTA
TCCTTGAAGGTGGTAGAGACTGGTGTACTCTCACAGATGGATTTCATAGG
ATTTATTCTATCATTTTTTGGCTAATCTTTGGTTGCATATTTATAATACA
TTAACTGTAGTTTTGGATCTTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_l19.g1 MSMg01no277_l19.g1 CHROMAT_FILE:
MSMg01no277_l19.g1 PHD_FILE: MSMg01no277_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:56 2005
         (154 letters)



>mm_chr8_114355743_114356296
          Length = 554

 Score =  194 bits (100), Expect = 3e-54
 Identities = 146/174 (83%), Gaps = 20/174 (11%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtatcagctataagcagccataggtaagccttggg--------------------ctg 40
           ||||||||||||||||||||  ||||||||| |||||                    |||
Sbjct: 411 cagtatcagctataagcagctgtaggtaagcattgggctgttgctggtatgtctccactg 352

                                                                       
Query: 41  ttgctggtgtgtctccgctgtagctggacgtcagtttgtctcagcttggctccacactta 100
           ||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||
Sbjct: 351 ttgctggtgtgtctccgctgtagctggactttggtttgtctcagcttggctccacactta 292

                                                                 
Query: 101 actttgtgccacttacagaacacacagtattaagtacagcagagaagtatcctt 154
           ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 291 actttgtgccacttacagaacacacagtattaagtacagcagagaggtagcctt 238


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 154
Length of database: 554
Length adjustment: 8
Effective length of query: 146
Effective length of database: 546
Effective search space:    79716
Effective search space used:    79716
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)