Query= MSMg01no277_o19.b1 MSMg01no277_o19.b1 CHROMAT_FILE:
MSMg01no277_o19.b1 PHD_FILE: MSMg01no277_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:08 2005
(369 letters)
>mm_chr8_115421830_115422594
Length = 765
Score = 642 bits (332), Expect = 0.0
Identities = 361/378 (95%), Gaps = 14/378 (3%)
Strand = Plus / Minus
Query: 1 cctgtattgctcttctggaaggtagttgatttcgttctagaagttgctactggtatgtat 60
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 476 cctgcattgctcttctggaaggtagttgattttgttctagaagttgctactggtatgtat 417
Query: 61 atgaatgagtacacactctcctgtggcctctcaggtctcttgatgagggaaattgcatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 atgaatgagtacacactctcctgtggcctctcaggtctcttgatgagggaaattgcatgc 357
Query: 121 taattaccaataaaatggatttattgtatatgtgtttatactctttagccatcaaaataa 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 356 taattaccaataaaatggatttattgtatatgtgtttatactctttagccatcaaagtaa 297
Query: 181 gtgaaagaaaattactgatgaacatagcatgcatcatgaattgtttattgcctgtaagtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 296 gtgaaagaaaattactgatgaacatagcatgcatcatgaattgtttattgcct----gtg 241
Query: 241 ttattgtggttaaattgatgatgcctgagaacattttagcatatacatatgtatgtatat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ttattgtggttaaattgatgatgcctgagaacattttagcatatacatatgtatgtatat 181
Query: 301 atgtttatatatgtatatt--------tatatatatatgatatatcatatatgtgata-- 350
||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 180 atgtttatatatgtatatttatatttatatatatatatgatatatcatatatgtgatatt 121
Query: 351 tatatatatatatgtata 368
||||||||||||||||||
Sbjct: 120 tatatatatatatgtata 103
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 765
Length adjustment: 9
Effective length of query: 360
Effective length of database: 756
Effective search space: 272160
Effective search space used: 272160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no277_o19.g1 MSMg01no277_o19.g1 CHROMAT_FILE:
MSMg01no277_o19.g1 PHD_FILE: MSMg01no277_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:08 2005
(677 letters)
>mm_chr8_115289322_115290395
Length = 1074
Score = 1187 bits (614), Expect = 0.0
Identities = 661/678 (97%), Gaps = 6/678 (0%)
Strand = Plus / Plus
Query: 1 tttaatgtcattagaggagttgggagatggtgctgtgagtaagggtgcccata-aatcaa 59
||||||||||||||||||||||||||||||||||||||||||| |||| ||| || |||
Sbjct: 202 tttaatgtcattagaggagttgggagatggtgctgtgagtaagagtgcttatacaa-caa 260
Query: 60 tgaggaggtaagtttgcgtccccagcagctaaataaaaagctaggatggcagtgcacatc 119
|||||||||||||||| |||||||||||| ||||||||||||||| | ||||||||||||
Sbjct: 261 tgaggaggtaagtttgagtccccagcagccaaataaaaagctagggtagcagtgcacatc 320
Query: 120 cctttgaccaagttctaggaaaacgtagagctaggagcttcacctgagcttgctggccga 179
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctttgaccaagttctagg-aaatgtagagctaggagcttcacctgagcttgctggccga 379
Query: 180 caaccagaaattggtctaaatgtaagtatccagcctgccttctttcctcctgtgtccaag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 caaccagaaattggtctaaatgtaagtatccagcctgccttctttcctcctgtgtccaag 439
Query: 240 ttgaaaaaaaggattcttttcttggatggtagaatagtattcttttaactcctgagtaag 299
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 440 ttgaaaaaaaggattcttttcttggatggtagaatagtattc---taactcctgagtaag 496
Query: 300 atttgtgtcctttttaatataaccatgacaaaacaatgtgaacaatttaagagcgtttgg 359
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 atttgtgtcccttttaatataaccatgacaaaacaatgtgaacaatttaagagcgtttgg 556
Query: 360 ggggcattttaaaactgtaattgtgagggaaccacactcagtgtaagaaagcaatttaaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ggggcattttaaaactgtaattgtgagggaaccacactcagtgtaagaaagcaatttaaa 616
Query: 420 tgtctccttgggctttgtagggtggtaggacttttgtttactggctgagatgttctctgg 479
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tgtctccttgggttttgtagggtggtaggacttttgtttactggctgagatgttctctgg 676
Query: 480 ctgtaagagtgactggcacacccaccacagagagctcagcttccctgtcccccatttggc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ctgtaagagtgactggcacacccaccacagagagctcagcttccctgtcccccatttggc 736
Query: 540 cttggctgtggccattgtagttataattgcctttgagaggaagagcaaggacatgagtgt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 cttggctgtggccattgtagttataattgcctttgagaggaagagcaaggacatgagtgt 796
Query: 600 tgccgtaggaagaactggagaatgtgttttagtggaaactccttggtttttattacagca 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 tgccgtaggaagaactggagaatgtgttttagtggaaactccttggtttttattacagca 856
Query: 660 acatttattttatataaa 677
||||||| ||||||||||
Sbjct: 857 acatttactttatataaa 874
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1074
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1064
Effective search space: 709688
Effective search space used: 709688
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
