BAC Information

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BAC

Clone NameMSMg01-277O22
Chromosome8 (Build37)
Map Location 69,795,062 - 69,795,411
singlet/doubletsinglet
Overlap genenone
Upstream geneMarch1, 1810029B16Rik, Tktl2, Npy5r, Npy1r, BC053440, LOC665453
Downstream geneNat1, Nat2, LOC100041265, Nat3, Psd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277O22.T7 (MSMg01no277_o22.b1)MSMg01-277O22.TJ (MSMg01no277_o22.g1)
ACCAG415696AG415697
length732742
length of high quality
(start - end)
290 (438 - 727)352 (391 - 742)
definitionCHROMAT_FILE: MSMg01no277_o22.b1 PHD_FILE: MSMg01no277_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:09 2005CHROMAT_FILE: MSMg01no277_o22.g1 PHD_FILE: MSMg01no277_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTACCTCTGAGCCCCATTTTAATGGGGTTATTTGATTTTC
TGGAGTCCACCTTCTTGAGTTCTCTATATATATTGGATATTAGTCCCCTA
TCCGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTT
TGTCTTATTGACGGTGTCTTTTGCTTTGCAGAGGCTTTGCAATTTTATGA
GGTCCCATTTATCGATTCTTGATCTTACAGCACAAGCCATTGCTGTTCTA
TTCAGGAATTTTTCCCCTGTACCTATATCTTCAAGGCTTTTCCCTACTTT
CTCCTCTATATTNNNCTGNGTCCNTGGCCTTNACCGGAGTTCCTTAATCC
ACTTAGATTTGACCTTAGTACAAGGAGACAAAAATAAATCAATTCTCATT
CTTCTACATGATAACCGCCAGTTGTGGCAGCACCATTTGTTGAAAACGCT
GTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGAC
CATAGGTGTGTGGGTTCATCTCTGGGTCTTCAATTCTGTTCCATTGGTCT
AATTGTCTGTCACTATACCAGTACCATGCAGTTTTGATCACAATTGCTCT
GTAGTACAGTTTTAGATCCAGCATGGTGATTCCACCAGAGGTTCTTTTAT
CCTTGAGAAGAGTTTTGCTATCCTCGGTTTTN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGTTCTGGCAAAAAGAAAACT
CAGACCAGCTGGGCAGTGTTGGTACACGCCTTTAATCCCAGCACTTGGGA
GGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGT
GAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACC
AAAAAAGAAAAGAAAAAAAAAAAAGAAAGAAAAAGAAAACTCAGACCTAA
TTTCCTAAATTGCCAGTTTCAGCCTGGAGTTAGCCTTGAGAAGTCATATC
AAAAGTAAGAACACCTTGGTTTCTCAGCCCGTGCCANCCACCCAAGATTG
GTGTAGTTGAAGTTCTCAAATAGCACCAAGTACAGATTCTATAGAGAGCC
AACATTTCTTCGAGGTTCAAAAAGTATCAAAACAAGTTCTCAGTTTCTAC
TGATTGACCCACACACAACAAAGGCTTTGCTGAAATATTTCACTCAAACC
CACACACAAAGGCTTTACTATACATATCACTACAAAGGTTGAGGCAAGTT
TGCTTTTATCTTTCCAAGAATATAAGAGCATTCAACTAAGGAAGCCAGAG
ACTAGTAGACAAGTGAAACATCTGAAGAAAGAGCACAGATAGTCAGGACA
AAATATCCCAAGTAAAAGAGTAAATTGGCCAAGTGGTATTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_o22.g1 MSMg01no277_o22.g1 CHROMAT_FILE:
MSMg01no277_o22.g1 PHD_FILE: MSMg01no277_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:09 2005
         (352 letters)



>mm_chr8_69795018_69795769
          Length = 752

 Score =  632 bits (327), Expect = 0.0
 Identities = 345/351 (98%), Gaps = 2/351 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   ccaagattggtgtagttgaagttctcaaatagcaccaagtacagattctatagagagcca 61
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 394 ccaaggttggtgtagttgaagttctcaaatagcaccaagtacagattctatagagaacca 335

                                                                       
Query: 62  acatttcttcgaggttcaaaaagtatcaaaacaagttctcagtttctactgattgaccca 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 334 acatttcttcgaggttcaaaaagtatcaaaacaagttctcagtttctactgatagaccca 275

                                                                       
Query: 122 cacacaacaaaggctttgctgaaatatttcactcaaacccacacacaaaggctttactat 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 cacacaacaaaggctttgctgaaatatttcactcaaacccacacacaaaggctttactat 215

                                                                       
Query: 182 acatatcactacaaaggttgaggcaag-tttgcttttatctttccaagaatataagagca 240
           |||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||
Sbjct: 214 acatatcactacaaaggttggggc-agttttgcttttatctttccaagaatataagagca 156

                                                                       
Query: 241 ttcaactaaggaagccagagactagtagacaagtgaaacatctgaagaaagagcacagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 ttcaactaaggaagccagagactagtagacaagtgaaacatctgaagaaagagcacagat 96

                                                              
Query: 301 agtcaggacaaaatatcccaagtaaaagagtaaattggccaagtggtattg 351
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  agtcaggacaaaatatcccaagtaaaagagtaaattggccaagtggtattg 45


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space:   254849
Effective search space used:   254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)