BAC Information

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BAC

Clone NameMSMg01-278B17
Chromosome8 (Build37)
Map Location 31,772,394 - 31,938,864
singlet/doubletdoublet
Overlap genenone
Upstream geneEG628189
Downstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568, 7420700N18Rik, LOC100041329, EG330731, LOC100041340, Nrg1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278B17.T7 (MSMg01no278_b17.b1)MSMg01-278B17.TJ (MSMg01no278_b17.g1)
ACCAG415822AG415823
length728732
length of high quality
(start - end)		678 (46 - 723)350 (383 - 732)
definitionCHROMAT_FILE: MSMg01no278_b17.b1 PHD_FILE: MSMg01no278_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:20 2005CHROMAT_FILE: MSMg01no278_b17.g1 PHD_FILE: MSMg01no278_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,938,191 - 31,938,864)(31,772,394 - 31,772,743)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTCCTGTCCTGAGATCTACCTCAGAGTGTGGCTTACCTTCTGTG
GTGTCACAAAGTCCCTCCATGCAGAATGGAGGTAGGCATGAAATCCTGCT
CCCTGCAGATCATAGGGAGAACCAGTTTTAAGGGTTTTTTTCTCACTCTC
CAACCACATCAGTAAAGTCTTCCCTGCAGCATAGTTACAAAAGGGATCTC
TTTATGTACACAGGGTTTTTTTGTATCATTCCTACGCAATCAGACTTACT
GTAGTGGGACCTGGGGGTGTTAATATTCAGGTAATGTTACAGCTGACCCG
CTTCTTTTCCACTTAAATAGCTGAAGAGCTTGGGTCTTATGAATGAAGGA
ATGACCTACAAGTTCTGGCAGTCTTAAACATGATTCCACAATTCTGTGTG
TTCTCCATTCACACCATGGCCTCACTCTGTAATTTTCTTACTTTTACCTC
ATACCTACACATGGATCAATATCCTCAGACAAGTTCAGATGCTGTTCTCT
TTGACCACCTAGAAGCTTCATCACAGACTACAGAGCCCTGAGGGGCCTCA
TTCCCCTAGATCTTCCTCCCTCTTTCTTTGTGAATTCAGTCACATAGATG
CAGGCAGGAGCCTTTCTACTATCCATTTGTTGAATAGGAAATTCCTGATA
GACTAGTCTGACCTCAAATGTCACCAAG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTAGTAATAATATTCACTGCCAAT
CCCAGTTATACAGAGTCACAAACAACAAACAGTTGCTCTGGAAGGATTAG
TACTGCATAGTTTGATGGAAAATAATTTATTGCTTGTGTAATACAACTTA
AAAAATTGAAGCTTTAGATAAAGTACCATTATTAGAGATACAAATGTTAA
TGTGGATTAGTCTTGCATAAAAATATACATGAGAAATAATTGAGATATGA
TTCCATAAATCTCAGATCTTTAACAAGAATCAAGGAAAGAGATAAGGTCA
GAAAGTAGAGATTTTTTTGATTACCGCCCCCTTTTTTTCTACAGAGCTAT
TCAACTTCTGAGAGCCTCAACAAGGAAAGGAGAAAGGCAATGCTGTTATG
AGGGAGGCTAACATTTAACCCACATAGTGTAAGTCAGTGCTTCAAAGACA
ACATTCCTACAGATGTCCAGATCAAGCAAGTGCCCTGTTGCAGCATGATA
AAGTGGCTTTGTTGTTTAATTTCTTTGTAATTTGAACAAGAAAAGTTTAT
GAGACCGTGTTCTGAATAAAATATCAGAGCAAAAAGAGACTGCTGCCACG
GGCCTTTAAATTTTAGCCCCAAAGTCTTTAATAACGTCATAAATAAGCAT
CCAGGAATGGTAGTACATGCCTATAGTCTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_b17.b1 MSMg01no278_b17.b1 CHROMAT_FILE:
MSMg01no278_b17.b1 PHD_FILE: MSMg01no278_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:20 2005
         (678 letters)



>mm_chr8_31937987_31939064
          Length = 1078

 Score = 1272 bits (658), Expect = 0.0
 Identities = 670/674 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttcctgtcctgagatctacctcagagtgtggcttaccttctgtggtgtcacaa 64
           |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 gaattccttcctggggtgagatctacctcagagtgtggcttaccttctgtggtgtcacaa 819

                                                                       
Query: 65  agtccctccatgcagaatggaggtaggcatgaaatcctgctccctgcagatcatagggag 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 agtccctccatggagaatggaggtaggcatgaaatcctgctccctgcagatcatagggag 759

                                                                       
Query: 125 aaccagttttaagggtttttttctcactctccaaccacatcagtaaagtcttccctgcag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 aaccagttttaagggtttttttctcactctccaaccacatcagtaaagtcttccctgcag 699

                                                                       
Query: 185 catagttacaaaagggatctctttatgtacacagggtttttttgtatcattcctacgcaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 catagttacaaaagggatctctttatgtacacagggtttttttgtatcattcctacgcaa 639

                                                                       
Query: 245 tcagacttactgtagtgggacctgggggtgttaatattcaggtaatgttacagctgaccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tcagacttactgtagtgggacctgggggtgttaatattcaggtaatgttacagctgaccc 579

                                                                       
Query: 305 gcttcttttccacttaaatagctgaagagcttgggtcttatgaatgaaggaatgacctac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gcttcttttccacttaaatagctgaagagcttgggtcttatgaatgaaggaatgacctac 519

                                                                       
Query: 365 aagttctggcagtcttaaacatgattccacaattctgtgtgttctccattcacaccatgg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 aagttctggcagtcttaaacatgattccacaattctgtgtgttctccattcacaccatgg 459

                                                                       
Query: 425 cctcactctgtaattttcttacttttacctcatacctacacatggatcaatatcctcaga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 cctcactctgtaattttcttacttttacctcatacctacacatggatcaatatcctcaga 399

                                                                       
Query: 485 caagttcagatgctgttctctttgaccacctagaagcttcatcacagactacagagccct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 caagttcagatgctgttctctttgaccacctagaagcttcatcacagactacagagccct 339

                                                                       
Query: 545 gaggggcctcattcccctagatcttcctccctctttctttgtgaattcagtcacatagat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gaggggcctcattcccctagatcttcctccctctttctttgtgaattcagtcacatagat 279

                                                                       
Query: 605 gcaggcaggagcctttctactatccatttgttgaataggaaattcctgatagactagtct 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gcaggcaggagcctttctactatccatttgttgaataggaaattcctgatagactagtct 219

                         
Query: 665 gacctcaaatgtca 678
           ||||||||||||||
Sbjct: 218 gacctcaaatgtca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space:   713424
Effective search space used:   713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no278_b17.g1 MSMg01no278_b17.g1 CHROMAT_FILE:
MSMg01no278_b17.g1 PHD_FILE: MSMg01no278_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:21 2005
         (350 letters)



>mm_chr8_31772194_31772943
          Length = 750

 Score =  669 bits (346), Expect = 0.0
 Identities = 349/350 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttttctacagagctattcaacttctgagagcctcaacaaggaaaggagaaaggcaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttttctacagagctattcaacttctgagagcctcaacaaggaaaggagaaaggcaatg 260

                                                                       
Query: 61  ctgttatgagggaggctaacatttaacccacatagtgtaagtcagtgcttcaaagacaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgttatgagggaggctaacatttaacccacatagtgtaagtcagtgcttcaaagacaac 320

                                                                       
Query: 121 attcctacagatgtccagatcaagcaagtgccctgttgcagcatgataaagtggctttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attcctacagatgtccagatcaagcaagtgccctgttgcagcatgataaagtggctttgt 380

                                                                       
Query: 181 tgtttaatttctttgtaatttgaacaagaaaagtttatgagaccgtgttctgaataaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtttaatttctttgtaatttgaacaagaaaagtttatgagaccgtgttctgaataaaat 440

                                                                       
Query: 241 atcagagcaaaaagagactgctgccacgggcctttaaattttagccccaaagtctttaat 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 atcagagcaaaaagagactgctgccacaggcctttaaattttagccccaaagtctttaat 500

                                                             
Query: 301 aacgtcataaataagcatccaggaatggtagtacatgcctatagtctcag 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacgtcataaataagcatccaggaatggtagtacatgcctatagtctcag 550


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space:   252681
Effective search space used:   252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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