BAC Information

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BAC

Clone NameMSMg01-278N01
Chromosome8 (Build37)
Map Location 12,894,942 - 12,895,476
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040155, LOC100040175, EG434280, EG434279, Sox1, 1700094C09Rik, Tubgcp3, Atp11a, LOC100040229
Downstream geneMcf2l, F7, F10, Proz, Pcid2, Cul4a, Lamp1, Grtp1, Adprhl1, Dcun1d2, Tmco3, Tfdp1, Atp4b, Grk1, Gm687, Gas6, LOC434282, 1700029H14Rik, Rasa3, 4932443I19Rik, LOC665516, Cdc16, Upf3a, AF366264, D8Ertd457e, 2410022L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278N01.T7 (MSMg01no278_n01.b1)MSMg01-278N01.TJ (MSMg01no278_n01.g1)
ACCAG416345AG416346
length717723
length of high quality
(start - end)
536 (122 - 657)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no278_n01.b1 PHD_FILE: MSMg01no278_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:16 2005CHROMAT_FILE: MSMg01no278_n01.g1 PHD_FILE: MSMg01no278_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGCGGA
ATTCCATGGTCTCTGCCCTGAACAGAGCTGGCGCCTCCCTAGTGCATAAC
CTCATAATCATTTGTTCACCGTGGAGCCCTGCCTGTCCGAGCTCCCTGTC
CTGCCTTGTGAATCCAGGGAGCAGGTCCAGATCCGGTTTCTTTCCAGGCA
GGGAAAAGCTGCTGGCCAGTCCCAAGGAGGCCTCTGAGATAGCATGCCAA
GAAATGTCATCTGGGGCATGTGTCACCATCGTGCATCAGGAGAAGGGAGG
TGTGTCCATGACAGATCCACTGCTCCTACCCACCCCCTCCACCATATCTC
CCATTCCCCTTTTACTCAGGACTGCACATCTGCCAGTACCCTGCTTGGGA
GCTGGCTGTGGGCAGAATTCCCTGACTAAGTCTCTTTGAGAAGGAAGGAA
CCTCTGCATGGAGAGGTATCGGGGCCTCCCTCCTTAGCAGCAGGTGTGAT
GGTGGGGGCAGGCGATAGCAGCAACCCCATGGCTATGAGGACAAGGGGGA
CATGCTGAGCGGCCTGGCTAAGGAGCTGCAGTGAGCCCGGGGCCTGGGTG
TGTCACTGAGATGCCTCTGATGCTGTAAAAGAACATCTGCTGTAGAAGCT
GTGCTCAGGACTAAAGCCATTGTCAGAGTCAGCGCTCTCCGTGGGAGGCA
GGTTCATCCCCATGACT
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACTTATTGAAAAAGGCAATTCCT
TATCTACTGAACAGTTTTATATCCATGTATATATGAATATATGAATATAT
ATATACATACTTTAAACAGATGCTTAAAATAAAAATCCTGCAATTATGAA
TTCTCTCATTAGATATAAACCATTGGTTTGGTAGCAAAGAATTAAAGGAA
TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC
CTTCTTTCTTTCCTGAGAAAGGCCCGTACTATGTATCCTTGGCTGGCTTG
GACCAGGCCCTTTTTTCACACTGATCCACCTGCCTCCACCTCCTGAGTGC
TGGGATGAAAGGCATGTGCCACCACAATGAAGAATAAAAAGAATTCTTGA
TTCCCTTTCTGTTTTCTGGTGGCTGAAATGGACTGTGGTGGACAGCAACA
TAAGAATTCTCTTGAATACTATGATCTGCTGAAGTGAGGTGGTATCTGGT
CACATGACCAGATTGTGGCTTTCTCTCTAGACCGACTTGCAGAGGTGTGG
TTTCCAGGACACTCATCGGTACATTTCCCTCCTTCTCTTGTCTTGTGTGG
CATGGACTCACCACAGTGAATGGCCTTGGCTTGAGTCTCAAAAGGCTGTG
ACTGCTCAATTTAAGTGCTGCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_n01.b1 MSMg01no278_n01.b1 CHROMAT_FILE:
MSMg01no278_n01.b1 PHD_FILE: MSMg01no278_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:16 2005
         (536 letters)



>mm_chr8_12894742_12895676
          Length = 935

 Score =  967 bits (500), Expect = 0.0
 Identities = 527/536 (98%), Gaps = 1/536 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggagccctgcctgtccgagctccctgtcctgccttgtgaatccagggagcaggtccaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggagccctgcctgtccgagctccctgtcctgccttgtgaatccagggagcaggtccaga 260

                                                                       
Query: 61  tccggtttctttccaggcagggaaaagctgctggccagtcccaaggaggcctctgagata 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 tccggtttctttccaggcagggaaa-gctgctggccagtcccaaggaggcctctgagata 319

                                                                       
Query: 121 gcatgccaagaaatgtcatctggggcatgtgtcaccatcgtgcatcaggagaagggaggt 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 320 gcatgccaagaaatgtcatctggggcatgtgtcaccatcttgcatcaggagaagggaggt 379

                                                                       
Query: 181 gtgtccatgacagatccactgctcctacccaccccctccaccatatctcccattcccctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtgtccatgacagatccactgctcctacccaccccctccaccatatctcccattcccctt 439

                                                                       
Query: 241 ttactcaggactgcacatctgccagtaccctgcttgggagctggctgtgggcagaattcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttactcaggactgcacatctgccagtaccctgcttgggagctggctgtgggcagaattcc 499

                                                                       
Query: 301 ctgactaagtctctttgagaaggaaggaacctctgcatggagaggtatcggggcctccct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 500 ctgactaagtctctttgagaaggaaggaacctctgcatggagaggtatcagggcctccct 559

                                                                       
Query: 361 ccttagcagcaggtgtgatggtgggggcaggcgatagcagcaaccccatggctatgagga 420
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ccttagcagcaggcgtgatggtgggggcaggcgatagcagcaaccccatggctatgagga 619

                                                                       
Query: 421 caagggggacatgctgagcggcctggctaaggagctgcagtgagcccggggcctgggtgt 480
           ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 620 caagggggacatgctgagcagcctgggtaaggagctgcagtgagcccggggcctgggtgt 679

                                                                   
Query: 481 gtcactgagatgcctctgatgctgtaaaagaacatctgctgtagaagctgtgctca 536
           ||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||
Sbjct: 680 gtcactgagatgcctctgatgccataacagaacatctgctgtagaagctgtgctca 735


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 935
Length adjustment: 10
Effective length of query: 526
Effective length of database: 925
Effective search space:   486550
Effective search space used:   486550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)