BAC Information

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BAC

Clone NameMSMg01-279H06
Chromosome8 (Build37)
Map Location 10,473,433 - 10,628,178
singlet/doubletdoublet
Overlap geneMyo16
Upstream geneTmem28, Lig4, Abhd13, Tnfsf13b
Downstream geneLOC100040008, LOC384782, LOC100040507, LOC665306, Irs2, Col4a1, Col4a2, Rab20, 0710008K08Rik, Cars2, Ing1, Ankrd10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279H06.T7 (MSMg01no279_h06.b1)MSMg01-279H06.TJ (MSMg01no279_h06.g1)
ACCAG416814AG416815
length741782
length of high quality
(start - end)		318 (24 - 341)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no279_h06.b1 PHD_FILE: MSMg01no279_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:02 2005CHROMAT_FILE: MSMg01no279_h06.g1 PHD_FILE: MSMg01no279_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,627,866 - 10,628,178)(10,473,433 - 10,473,717)
sequence
XXXXXXXXXXXXXXXXXXXXXXXATGCGGAATTCACCCATCTATACGACA
GAGGTCACCCTACTTCATCTTCCTCTTTGGAAGGTTGCACAGAACTGTCA
TTACCATTGACAGACAGGAGGCAACTGTTATACCAAGGCATAGACAGAGA
CACCATTAAACCTTTGGAGCCCATGGATCGGTCCTCTGCTCTATACACAG
CTCGTGGCCTGATTTGAGGAGATTCCATGGACGCCTTTCTGTGATACCCA
CAGTGTAGACAGAGCAGCTAGGCAAGAGAGATCTGTTTTCCTATCACTCT
GCTTTTAACCATCTGTGTTGGTGAGGTTGCCATGGTAGAATGTCTTCTTA
GGCCCCCCCCCCCGAATGGGGATGACCAGCTGAGCAACAGGAAAAGGGAA
ATAACGCAGACATAGAAACTGTGACCCTGAACTTCACTCCTTACAGGGAC
CTTAAAGACATGGTAGATGTGGAACTGTAGCTGAGCTTGGCCTGAAGGTC
TGCCCTATGGAGAGCAGCACTGGGCTAGATGTTCAATGTGGCCCTAGATC
TTGGTCTTAGAATATAGCTCACAATCATTTAAAAAGTAAGAACCAGTTCG
AGGGGTGTGTGACTGACATTGTGAGAACAGGCATGAAAGAGGAATAACTT
ATGGAGGCTTCCCGTTTGAATTGAAGACGTCCCCTAAAATTGCTGAAGGA
GTCCGGATGCCCAAATTAATATACCATTCGATGAAATAACT

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTGAAAACTGAGGTTATTTTGTT
ACTAGGAAATAGTAGCTGCTATAAAATTATTAGACTTTAGCATGAAGTGT
TTACCTTAAGTGCACAAAAGAGAAATGTCCCTTCTCCTGAAATGGAACCA
CTAGAAAATATTAGTTTAGTTATAGGATTGCTCAGAGAGCACATGGGGGA
GAAAAGGGGATCTGGAGACTGACCAGCTTGGTCCTGCAGGAAGTAGGCTG
GAGGCAAAGCAGAGATGGGGCTGATGGAGCTGAAGGGAGTCAGGAAGAAT
GATGTGGGCAAGGCATTTGTTTTTGTCCCCCCCCCCCCCACACTGGGGTT
AGGCTCAATTCTCAGCAGCTGTGTTCCTGGAACCCAACCTCCTCCTCCAG
TGACACCCGGCAGACATCTTCCCCTTTGGGCACATCCTCCCAGTCTTGGG
CTTTGGCCTCTCCTGACCGCTTTTCAATGAGGTTGGTGTGATCCAAGCAC
TGTGTGTGAGGTGGTGAGATGCTGTAACATATATATTATATTTTTATTAT
TTTTTTTCTTTTTTATGATAATCTTTTTTTAATTAAATTATCTCGATTAT
ATCTTTTATCTGAATAATCATAATCTACTATATAATACATTATAAAAATT
TCTATCTTCATTTAACTCAATATCCGATCATTTCTTTTTTTTTTTTTTAT
ATTTTCTCTTATATTTTTCATCTTCTATGCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_h06.b1 MSMg01no279_h06.b1 CHROMAT_FILE:
MSMg01no279_h06.b1 PHD_FILE: MSMg01no279_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:02 2005
         (318 letters)



>mm_chr8_10627662_10628379
          Length = 718

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattcacccatctatacgacagaggtcaccctacttcatcttcctctttggaaggttg 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ggaattcacccatctataagacagaggtcaccctacttcatcttcctctttggaaggttg 458

                                                                       
Query: 65  cacagaactgtcattaccattgacagacaggaggcaactgttataccaaggcatagacag 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 cacagaactgtcattagcattgacagacaggaggcaactgttataccaaggcatagacag 398

                                                                       
Query: 125 agacaccattaaacctttggagcccatggatcggtcctctgctctatacacagctcgtgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 agacaccattaaacctttggagcccatggatcggtcctctgctctatacacagctcgtgg 338

                                                                       
Query: 185 cctgatttgaggagattccatggacgcctttctgtgatacccacagtgtagacagagcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 cctgatttgaggagattccatggacgcctttctgtgatacccacagtgtagacagagcag 278

                                                                       
Query: 245 ctaggcaagagagatctgttttcctatcactctgcttttaaccatctgtgttggtgaggt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ctaggcaagagagatctgttttcctatcactctgcttttaaccatctgtgttggtgaggt 218

                        
Query: 305 tgccatggtagaa 317
           |||||||||||||
Sbjct: 217 tgccatggtagaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no279_h06.g1 MSMg01no279_h06.g1 CHROMAT_FILE:
MSMg01no279_h06.g1 PHD_FILE: MSMg01no279_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:02 2005
         (285 letters)



>mm_chr8_10473233_10473917
          Length = 685

 Score =  536 bits (277), Expect = e-157
 Identities = 283/285 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgaaaactgaggttattttgttactaggaaatagtagctgctataaaattattagact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgaaaactgaggttattttgttactaggaaatagtagctgctataaaattattagact 260

                                                                       
Query: 61  ttagcatgaagtgtttaccttaagtgcacaaaagagaaatgtcccttctcctgaaatgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagcatgaagtgtttaccttaagtgcacaaaagagaaatgtcccttctcctgaaatgga 320

                                                                       
Query: 121 accactagaaaatattagtttagttataggattgctcagagagcacatgggggagaaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accactagaaaatattagtttagttataggattgctcagagagcacatgggggagaaaag 380

                                                                       
Query: 181 gggatctggagactgaccagcttggtcctgcaggaagtaggctggaggcaaagcagagat 240
           ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 gggctctggagactgaccagcttggtcctgcaggaggtaggctggaggcaaagcagagat 440

                                                        
Query: 241 ggggctgatggagctgaagggagtcaggaagaatgatgtgggcaa 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggggctgatggagctgaagggagtcaggaagaatgatgtgggcaa 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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