BAC Information

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BAC

Clone NameMSMg01-279J14
Chromosome8 (Build37)
Map Location 7,077,360 - 7,077,697
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665127, EG546032
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279J14.T7 (MSMg01no279_j14.b1)MSMg01-279J14.TJ (MSMg01no279_j14.g1)
ACCAG416917AG416918
length764793
length of high quality
(start - end)
314 (45 - 358)94 (76 - 169)
definitionCHROMAT_FILE: MSMg01no279_j14.b1 PHD_FILE: MSMg01no279_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:14 2005CHROMAT_FILE: MSMg01no279_j14.g1 PHD_FILE: MSMg01no279_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATGTCCTTTCTTCAACTTTCTTCACCAGTTTCTGATGAGAAGCTCG
CTGACATGGGAATTGCTTCCTTCTAAATGTGTACTCTGTTGCTCTCACTG
TTACAAGCCGTAGGCTCTTGTCCTTATTTTTCAATCTATATTGTAATCTC
TATCCCTTTTCTCTGTATTAGATTATTTAAAAGAGCATCAAATAAAAAAT
ATATGATCCCTTTTATTAATTGTTTCTAGAGATACTTAGCAACCTCTCCT
TTATACTCTACATAGAACCCCAATGGCAAGAATGTTAAAATCTTCGTATA
GTCTCAGAGATTTAGTATACTCTGCTCACCACTTCTTTTATTCTATTGTA
TTTATTTTCATATTATGTTCAACTTTTCCTATTCTGGTTCACTGATTTTT
TTTGTTCTTTTTTTTTAATTTTTATTATATCATATATATATATGAGTTGA
GAAAGATGTTAACCCAAATGCCAATGCTACTAGCAGGTGGAAAGAGGTAC
ACACACACACACACACACACTTTCTCACTCACACTACACTCTCAGGTATA
CACCTCTTCTCACTTTGCTGGTAGCATTGGAATTTGGGGTATCAGCTTTC
TTAACTTGTAATGAAAGATAAGAGGCAAAAAATTTCCTATGAAATTCATC
CTTTTGTTTTTTTCTTTGAGCTATCATATTTAGTTTCCTTGTCTTTTCTC
GGTCTCTGTCTAAA
CGATGACTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGGAGAATTTTTAGAGGATATATAA
ATGATAGAACCCAGACAGGTTGTGTGGGTTAGGTGGGACCGGGGTGGGGG
GTGGGGCGNCACTGTTGGTTGCTGTATGCTATGTAATTGTGTACAATATG
AATAAAAATTAGCCAGGCTTGTTGTCTCTCGTCTTTAATCTCATTTCTTG
TTAGGTTTATTCTTGTGGATTTCTGAGTTCATGGTCTTCTCTGATCTCCT
TTCTGTTTTTCTTGACTGACTTGTTATTTTTTTTTTTTCATTTCTCGTCT
ATATATCATTAAATGTTTTTTTATTTTTTCCCCAGAACAAAGCCTTTTTA
TATTATTTTTATATTTTTTATTTCCCCCCTCCTTATTAAAAAAAAAAAAT
AAGTTTTTTGTGGGGTTTATCTCTTTTTTTTTGCCATTTATATTATTTAT
ATAATTTTCTTTTTTTTTTTATATTATTTCTTTTTTATCTTTTTATTGTT
CTTTTTTTATTTCCTTTAATTATCTTTAATATTACTCTCATTTACTATAT
TTTATTTTTATTATTTTTATTTATAAATTTTTTTTCTCTTTCTTATTTTT
TTTTTTTATTTTTCTTTCTTTCTTTCTATTTTTTTTATTTTTTTCTACTT
TATTCACTTTTTTTTTCATTTATATTATCCCTTCTTTTATCCTTTTTTTC
TTTTCTCTTTTATTATTTTTTTTTTTTTTATCTATTTTTTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_j14.b1 MSMg01no279_j14.b1 CHROMAT_FILE:
MSMg01no279_j14.b1 PHD_FILE: MSMg01no279_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:14 2005
         (314 letters)



>mm_chr8_7077312_7078025
          Length = 714

 Score =  516 bits (267), Expect = e-151
 Identities = 307/339 (90%), Gaps = 30/339 (8%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgtcctttcttcaactttcttcaccagtttctgatgagaagctcgctgacatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gaattcatgtcctttcttcaactttcttcaccagtttctgatgagaagctcgctgacatg 327

                                                                       
Query: 65  ggaattgcttccttctaaatgtgtactctgttgctctcactgttacaagccgtaggctct 124
           |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 326 ggaattgcttccttttaaatgtgtactctgttgctctcactgttacaagccgcaggctct 267

                                                                       
Query: 125 tgtccttatttttcaatctatattgtaatctctatcccttttctctgtattagattat-- 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 266 tgtccttatttttcaatctatattgtaatctctatcccttttctctgtattagattattt 207

                                                                       
Query: 183 ---------------------------ttaaaagagcatcaaataaaaaatatatgatcc 215
                                      ||||||||||||||||| |||||||||||||||
Sbjct: 206 aactttgttaagatgtcatctaaatcgttaaaagagcatcaaat-aaaaatatatgatcc 148

                                                                       
Query: 216 cttttattaattgtttctagagatacttagcaacctctcctttatactctacatagaacc 275
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 cttttattaattgtttctagagatacttagcaacctctcctttatactctacatagaacc 88

                                                  
Query: 276 ccaatggcaagaatgttaaaatcttcgtatagtctcaga 314
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 87  ccaatggcaagaatgttaaaatcttcgtatagtctcaga 49


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)