BAC Information

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BAC

Clone NameMSMg01-279J22
Chromosome8 (Build37)
Map Location 94,320,836 - 94,321,124
singlet/doubletsinglet
Overlap genenone
Upstream geneChd9, LOC100041156, EG626231, Rbl2, Aktip, LOC667162, LOC100041222, Rpgrip1l, AJ237917, LOC100041254, LOC674324, LOC100040628
Downstream geneIrx3, 4933436C20Rik, Irx5, Irx6, LOC100041325
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279J22.T7 (MSMg01no279_j22.b1)MSMg01-279J22.TJ (MSMg01no279_j22.g1)
ACCAG416933AG416934
length754756
length of high quality
(start - end)
294 (62 - 355)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no279_j22.b1 PHD_FILE: MSMg01no279_j22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:15 2005CHROMAT_FILE: MSMg01no279_j22.g1 PHD_FILE: MSMg01no279_j22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGGATCCGCGGAATTCTCC
AGCTATACCCAGCCCACTAGTGTTTGTGGAGACAAAAAGAAACTACTGCT
TTGGAGAAAAAAAATAGCACGTTTTTGTTTGTTTGTTTGTTTGTTTGTTT
ATCTGTTTTAAGATGGATGGCACTTTTCTCAGTCAAATGTTTTTTATGGG
CCTTTCTGGCTTTTAAAAAAAATGCAATACTAGCAACTGTTAGTAGGAAG
GTTATATGGTATGGTTGCTACAGGTGACAGCATGGTAATTCTTCAAAATA
TTAAAAATAGGGTTGCTGGTTTTTGAGCAATTCTGCTTCTAGGCATGTAC
TTCTAATTTTTTGTTTCATCACCCCTCCCCACCAATGTGTGTATCTTGGT
TCACAGGAGCCCCCCCCCCAACAAAAAAAAAAAAACAAGGCAAAGACACT
TAGATATATGATCAAAATATGCTATGGAAAGAGGATGGAATATTACTCAG
TCTTTATAAGCAAGTACTTTCTGTAACATCCTACTTCATGGACCATGCCT
AGGTAATTAAGCCAGACAGAATATATTATATGCCGTGATGTCTTTATTTG
ATCTCCTGTTGCTTTGAAGATATTCCACGACCAATGTTACTTATACAATA
CATAGTTTATTGTACGTGTTACATCGCCTTCTAGTTTTGATCCTCTTCTT
TCTCTTTCCTTTCACCCTGATTTACTTTACTCTATCCTGTTATTTTCTAT
TCCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGCCCTTGGCTTCCTGGGAAGT
AAATGGATAGTCAGTGTGGGTCAGGCCTAAGCCCAGGAGGTAGGAACTAA
GATGCCCTTGTACAGATACTCATGGCACTAACCAGAGCCTTGACCCTTGT
TCTGTGGTACTGACTTCACATGTATGACCTAAGAAGATGGAGCGTCAATG
CTTCAACTGTGAAAGACCTTGAACCCCTGAAACACCTTTGCAAACAGAGA
AAGGAAGTGTTTGCTTGAATATCAGTCCGTCCCCGTCCCCCCAACCCCCC
GCTGTCACTGTCCTTTTCTAAGTTACCCCAACAAACCCTGAGGACTTTCG
TTATGTGGGCACCGGTCCCCCCACAACAGAGACACAAAACGCCCGTGGCT
CTGGCAGCTGTGTCCTCATCTCGTGGACCCGTACACTGCGGCGGCCCTCG
CATACAGATCCACAATGTTGACTGTGCTGGATCCAGACTGGAAGCTGATC
CAGGTTGTAAGCACTAGCTCTTTCTACCTTCCAACAGTGTGCAAGACCTT
GCTCACGAGAGCCCTGCTCTGCATCTCATATGCACAGTGCATGGCTATCC
CGTGAATTCCTAAGGTCCAGACCGGTGGGTCTCAAAGGCGTCTCCACTTC
TAACCCCATTCAAGGCGGTCCCTACTCCTGAATGTGTATTTCCCTTTCTT
ATGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_j22.g1 MSMg01no279_j22.g1 CHROMAT_FILE:
MSMg01no279_j22.g1 PHD_FILE: MSMg01no279_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:16 2005
         (289 letters)



>mm_chr8_94320636_94321324
          Length = 689

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgcccttggcttcctgggaagtaaatggatagtcagtgtgggtcaggcctaagcccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tctgcccttggcttcctgggaagtaaatggatagtcagtgtgggtcagggctaagcccag 260

                                                                       
Query: 61  gaggtaggaactaagatgcccttgtacagatactcatggcactaaccagagccttgaccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggtaggaactaagatgcccttgtacagatactcatggcactaaccagagccttgaccc 320

                                                                       
Query: 121 ttgttctgtggtactgacttcacatgtatgacctaagaagatggagcgtcaatgcttcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgttctgtggtactgacttcacatgtatgacctaagaagatggagcgtcaatgcttcaa 380

                                                                       
Query: 181 ctgtgaaagaccttgaacccctgaaacacctttgcaaacagagaaaggaagtgtttgctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtgaaagaccttgaacccctgaaacacctttgcaaacagagaaaggaagtgtttgctt 440

                                                            
Query: 241 gaatatcagtccgtccccgtccccccaaccccccgctgtcactgtcctt 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaatatcagtccgtccccgtccccccaaccccccgctgtcactgtcctt 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)