BAC Information

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BAC

Clone NameMSMg01-279K09
Chromosome8 (Build37)
Map Location 43,369,014 - 43,369,698
singlet/doubletsinglet
Overlap genenone
Upstream genePcm1, Asah1, Frg1, LOC100039376, Gm1815, LOC671994, Zfp353, EG620772
Downstream geneLOC628212, Triml1, LOC622082, EG622117, LOC100039417
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279K09.T7 (MSMg01no279_k09.b1)MSMg01-279K09.TJ (MSMg01no279_k09.g1)
ACCAG416955AG416956
length740738
length of high quality
(start - end)
689 (47 - 735)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no279_k09.b1 PHD_FILE: MSMg01no279_k09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:18 2005CHROMAT_FILE: MSMg01no279_k09.g1 PHD_FILE: MSMg01no279_k09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTTTATTCTAGCCTTGATCAACATAACTTCTTACTATAATGCT
TTCTGAACTAAGTGATAATCTGTAGGTTTTGTTGTAAAATCAACATATTT
TAAGACTAAAATTAATATTTCTTTCTTTTTTATGCTTACATGATAAGTGT
AAAATATTTTGCTTCTTTTATATATAACTAATTAAAGGTTTAAAGACAAT
GCCACTCTTTCTGGAAGGCTATCCTGAACCTGAATCAATCATATACCAAA
GTGCAAAATAAAATGTTTGAATGATTTAAGACTGTAACTGTAATAGAATA
CAAACACCCAGAGTTCTTGAGACCTGAGACGCTTTCTGGTCTCCATTTGT
TAAAAGGTCTCATTAGTCCACGAGACTAATCATTTAGCCCTTAGTGCACA
AATGATGATCTGAATTAAATCCCCGTGCACATGATGGAAGGAGAGAACTC
ATTCACAGAGGTTTACCTATGGCTTTATGCTTGTATTCCTAAACATATAT
GTGTGGATACACACACATACACACATACACACATACACAAACGTCAACAA
CAATATAGGTACGTTAAAAGTACGCATGTCTCTTTACAACGAGAAAATAG
AAATGAGCAAAAGTAGTATTTATTAGGCAGTTTGTAATACTAATGATAAG
GGACATCGCAATGTTTCTTAATACATTTTCTATCAAACAC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTTCTTAACAACTGAATTATGA
TCCATTGTGTAAATGTAGAATATTTCTATCATCTACCTATCAGTTGACAG
ACATCTTTTTGGCTTCATTATCTTGGTCATTGTGAGTAGAGCAGCAGTGA
TCATCATTGAGCAACCATCTTTGTAGTAGCACATAAAGTCTCTGTGGTAT
GCGCCTAAGAATGAGATAGCTATACCATGTGCTCAATAATTTCTAGATTT
TGAAGGGAAAATTACATGAATAATGTGGTGGCTGCATCTGCTACATCCTG
TAGCCAGGTTTGACTTGCAGCGGAGGGATAAGGACACCAACCCACTCACA
AAATCTTTGATCCCCAATTTGTCCTGCCTACAATAAGTCCAGGGACAAAA
ATGCAGAAGAGACTGAGGGAAAGGCCAACCCATGAGTGGCCCACATAGAG
ACCCGTCCCATAGGCAAGAACAAATCCCTGTCACTATTAATGATACCTTG
TTATGCTTGTAGGCAGGAGCCTAGCATAACTGTCCTCTGAGAGGCTTCAC
CCAGCAGCTGGCCAAAACACATGTAGATACCCACAGCCAAACATTAGAAA
GAGCTCAGAGAGTCCTGTGGAAGATTTGGAGGAAGGATTAAGGGACCTGA
GGATAATAGAAACTCCACATAAAGACAAACAAAGTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_k09.b1 MSMg01no279_k09.b1 CHROMAT_FILE:
MSMg01no279_k09.b1 PHD_FILE: MSMg01no279_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:18 2005
         (689 letters)



>mm_chr8_43368810_43369898
          Length = 1089

 Score = 1317 bits (681), Expect = 0.0
 Identities = 684/685 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtttattctagccttgatcaacataacttcttactataatgctttctgaacta 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtttattatagccttgatcaacataacttcttactataatgctttctgaacta 264

                                                                       
Query: 65  agtgataatctgtaggttttgttgtaaaatcaacatattttaagactaaaattaatattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtgataatctgtaggttttgttgtaaaatcaacatattttaagactaaaattaatattt 324

                                                                       
Query: 125 ctttcttttttatgcttacatgataagtgtaaaatattttgcttcttttatatataacta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctttcttttttatgcttacatgataagtgtaaaatattttgcttcttttatatataacta 384

                                                                       
Query: 185 attaaaggtttaaagacaatgccactctttctggaaggctatcctgaacctgaatcaatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attaaaggtttaaagacaatgccactctttctggaaggctatcctgaacctgaatcaatc 444

                                                                       
Query: 245 atataccaaagtgcaaaataaaatgtttgaatgatttaagactgtaactgtaatagaata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atataccaaagtgcaaaataaaatgtttgaatgatttaagactgtaactgtaatagaata 504

                                                                       
Query: 305 caaacacccagagttcttgagacctgagacgctttctggtctccatttgttaaaaggtct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caaacacccagagttcttgagacctgagacgctttctggtctccatttgttaaaaggtct 564

                                                                       
Query: 365 cattagtccacgagactaatcatttagcccttagtgcacaaatgatgatctgaattaaat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cattagtccacgagactaatcatttagcccttagtgcacaaatgatgatctgaattaaat 624

                                                                       
Query: 425 ccccgtgcacatgatggaaggagagaactcattcacagaggtttacctatggctttatgc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccccgtgcacatgatggaaggagagaactcattcacagaggtttacctatggctttatgc 684

                                                                       
Query: 485 ttgtattcctaaacatatatgtgtggatacacacacatacacacatacacacatacacaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttgtattcctaaacatatatgtgtggatacacacacatacacacatacacacatacacaa 744

                                                                       
Query: 545 acgtcaacaacaatataggtacgttaaaagtacgcatgtctctttacaacgagaaaatag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acgtcaacaacaatataggtacgttaaaagtacgcatgtctctttacaacgagaaaatag 804

                                                                       
Query: 605 aaatgagcaaaagtagtatttattaggcagtttgtaatactaatgataagggacatcgca 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aaatgagcaaaagtagtatttattaggcagtttgtaatactaatgataagggacatcgca 864

                                    
Query: 665 atgtttcttaatacattttctatca 689
           |||||||||||||||||||||||||
Sbjct: 865 atgtttcttaatacattttctatca 889


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space:   732641
Effective search space used:   732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)