Query= MSMg01no279_m05.b1 MSMg01no279_m05.b1 CHROMAT_FILE:
MSMg01no279_m05.b1 PHD_FILE: MSMg01no279_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:26 2005
(721 letters)
>mm_chr8_104079919_104081039
Length = 1121
Score = 872 bits (451), Expect = 0.0
Identities = 502/527 (95%), Gaps = 15/527 (2%)
Strand = Plus / Plus
Query: 4 ggaattcttctgtctctacttctcttcatttacacgaattctggcgaataaaccaagacc 63
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 191 ggaattcttctgtctctacttctcttcatttacacgaattctggcaaataaaccaagacc 250
Query: 64 ttcaactcgtgcgacaagttcctgtaccactaagaaggctctggtacccatttcatacat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ttcaactcgtgcgacaagttcctgtaccactaagaaggctctggtacccatttcatacat 310
Query: 124 ttaactgtgggtgtacacacaatcctattagtgggtcatctttaataaactcctagtgaa 183
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ttaactgtgggtgtacacaaaatcctattagtgggtcatctttaataaactcctagtgaa 370
Query: 184 gtaactttgacaggaggttgggcatcttgaaaatgtgggtccactgagtatggttgtatt 243
|||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 371 gtaattttgacaggaagttgggcctcttgaaaatgtgggtccactgagtatggttgtatt 430
Query: 244 tgaatgtgatccgttgtggtgtgttctattctctctttgaactccatgtcaactttcata 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 431 tgaatgtgatccgttgtggtgtgttctattctctctttgaactccatgtcaacttttata 490
Query: 304 agagaacaagacatccattagtttaatctaaaagatatccatttccatgttacaaag--- 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 agagaacaagacatccattagtttaatctaaaagatatccatttccatgttacaaagctt 550
Query: 361 ----------taatagccaaaaaggaaaaaacaaaagatagggaccattgtagaaaattt 410
|||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 551 gatggaacagtaatagccaaaaagaaaaaaacaaaagatagggatcattgtagaaaattt 610
Query: 411 cagttgcctctaaatattctagttctgatacttacagtcattcccataatgccccaagtg 470
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 611 cagttgcctctaaatattctagttctgatacttatagtcattcccataatgcctcaagtg 670
Query: 471 ctcatactcattaaatcatatct-ttctttatatatatatatatata 516
||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 671 ctcatactcattaaatcatat-tgttctttatatatatatatatata 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 74
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 721
Length of database: 1121
Length adjustment: 10
Effective length of query: 711
Effective length of database: 1111
Effective search space: 789921
Effective search space used: 789921
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no279_m05.g1 MSMg01no279_m05.g1 CHROMAT_FILE:
MSMg01no279_m05.g1 PHD_FILE: MSMg01no279_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:27 2005
(682 letters)
>mm_chr8_104247843_104248924
Length = 1082
Score = 1197 bits (619), Expect = 0.0
Identities = 666/682 (97%)
Strand = Plus / Minus
Query: 1 cttaaagctatttaacctaaacacaccactctcgttagtatcaactcgacttctaatttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 cttaaagctatttaacctaaacacaccactctcgttagtatcaactcgacttctaatttt 823
Query: 61 caatgcataattaggagagtttgctagcaagtgcataaattatatttcattcaataattg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 caatgcataattaggagagtttgctagcaagtgcataaattatatttcattcaataattg 763
Query: 121 caaatatgtggacttccatgagtataaggagagagtgccaaaaattggcagtgtagagaa 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 762 caaatatgtggacttccatgagtataaggagagagtgccgaaaattggcagtgtagagaa 703
Query: 181 cttgatattttgatgtatgttataaccttccagatataattctgtgaagatataaagttg 240
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 702 cttgatattttgatgtatgttataaccttccagatataattctatgaagctataaagttg 643
Query: 241 ccgcatgcattcaatactgtatgatttccatgtgtggttggacacgtgtatttttataca 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 642 ccgcatgcattcaatactgtatgacttccatgtgtggttggacacgtgtatttttataca 583
Query: 301 tatatgtgcacattcacagttagaaggcctgttctaattacagctgtctgtttgatcatt 360
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 582 tatatgtgtacattcacagttagaaggcttgttctaattacagctgtctgtttgatcatt 523
Query: 361 ttgcctgttcccttcactaaagtgggaaaattggtagctggttagggatttggtggggtt 420
| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 522 tcgcctgttcccttcactaaagttggaacattggtagctggttagggatttggtggggtt 463
Query: 421 gggggcatttaaacacattctcaaaagtgattttctgccatccatgtctgtggaatattg 480
|||||||||||||||||||||||||||||||||||||||| |||||| | | ||||||||
Sbjct: 462 gggggcatttaaacacattctcaaaagtgattttctgccacccatgtgtatagaatattg 403
Query: 481 agaaggtcagtgtagtacctcactgtctctaattctttgagagcattactcattgaaatc 540
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 402 agaaggtcagtgtagtacctcactgtctctaattctttgagaacattactcattgaaatc 343
Query: 541 ccggtgccatattcaagcatgtaatgagaacataacacaaattgcacctattattttgac 600
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ccggtgccatattcaagcgtgtaatgagaacataacacaaattgcacctattattttgac 283
Query: 601 agtgatgataatgagaaggggaaatgaaatcatcangataatgctgtgagtgactccctg 660
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 282 agtgatgataatgagaaggggaaatgaaatcatcaggataatgctgtgagtgactccctg 223
Query: 661 aaatccctaacacttctgaact 682
||||||||||||||||||||||
Sbjct: 222 aaatccctaacacttctgaact 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space: 720384
Effective search space used: 720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
