BAC Information

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BAC

Clone NameMSMg01-279N04
Chromosome8 (Build37)
Map Location 34,457,609 - 34,506,739
singlet/doubletdoublet
Overlap geneWrn, Purg
Upstream geneEG546052, LOC100042715, LOC628408, EG628412
Downstream geneLOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2, Rbpms, LOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279N04.T7 (MSMg01no279_n04.b1)MSMg01-279N04.TJ (MSMg01no279_n04.g1)
ACCAG417078AG417079
length768760
length of high quality
(start - end)		599 (46 - 644)669 (77 - 745)
definitionCHROMAT_FILE: MSMg01no279_n04.b1 PHD_FILE: MSMg01no279_n04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:31 2005CHROMAT_FILE: MSMg01no279_n04.g1 PHD_FILE: MSMg01no279_n04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,457,609 - 34,458,203)(34,506,071 - 34,506,739)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGATCAGCTCTTGGCTTCCACCATGAGCCTCTGAGGTTGAAATG
GGATTAGAACTCAGATCTCCAGCCTTGGTGGCAGGCCCTGTTACCCACTG
AGCCATGTCACTGACCCTGGTGTAAAAATATTCTTTAAGATTTTTATTTT
TCTAACCAGGTGTGTATGGGAAGAGGGGTACATAGTGCACATAAGCACAG
GTGCCTGTAGAGGGCAGAAGAGGGACTCAGCACCCTGGAGCTGGAGTCAT
AGAAAACAGAGGTCTGTGAGCCACCACTATGGGTACTGGGAACCAGACTG
GGGTCCTCTGCAATAGCGCTTCCTGCTCTTAACGGGAGGCAGGGAGGGGC
ATGTTTCCAGCCCCTGATGCGAGGATCTCCAAAGTGGCCATATGAAAAGT
AATGCAAAGCAAACCAAGCCCGTCTTGCACTTCAAAATGAACACAGAGAT
TCATTCAGACCACTTCAACTTACTGTGCTGAGCTGATCTTGGCTGGCAAC
CTGACTACATTTGGAATCATCTAAAATATAAGCCCTGGGCTCACCTATGA
GGGCTTTTCTTGATTAGATTATGGGACAGGAGAAGAGCATCCTAAATCTA
GGTTACGCTTTCTGATGGCGGCCCACTTCTGAAGGGGCACGGAAGAGGGA
AGCTTTGGCTTTTTGTCAGCCTGTCCTCAGTCTGGCTGGCAAGTTCGTCT
GTCTTGCTACTAANGCAN

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTTTACACCTATGCATGGTAA
GCTTTTTAGGACATTTACTAAACAGCAATGGATTTCCTCCTGTTAGAGCT
CAAGATTATGAAATTATTGGTACAAATCTTACTGCTAGTCTGAAGAACAT
GAAGGCCAATACAGCAGACTCTGAAGCAAATGAGTAAGTGGCAAGAAACG
CTCTGGACTTAGGTAGCTGTATACATTGTTATCCTTATTGTTGGTGCATT
GTTTTGTGGTTCTATGCTTAGATCTGTTGTGAAGTTTTGGCATTTCAAGT
GTGTATTTTTAGGTAAAGCTGCAGTTTGACAGTAGCTGAGGAAAAAATCT
CATCCTAATGACAAATGGAAAGAACCAACAAACTAAACTGCTCTCTCATG
TCCCACTTAGATCCCAGACACCAAGAGAAGCAATTGAGAACTGAAAATAC
ATCTGCTTTTTTGAGGAGAGGGAGGAGAAAACAGAGAAAGAACTTTGTCT
ACAATAGTCAATTAATTCCATGGAATTTGTTCAAAATAGACCAGCTAAAT
TGCTACTGCAAACCACCACTGGGCCAAAGATAGGCAATCACATGGCTTGT
TTCAGGAAAGTAGAATTTTTAAGACAATCAAAATATTTATGTGCTTATGT
TCTATAAGCTATAGGTATGCTGCTCTTAAATGCTGTCTTTGATAGTCCGT
TGAGAAAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_n04.b1 MSMg01no279_n04.b1 CHROMAT_FILE:
MSMg01no279_n04.b1 PHD_FILE: MSMg01no279_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:31 2005
         (599 letters)



>mm_chr8_34457405_34458403
          Length = 999

 Score = 1151 bits (595), Expect = 0.0
 Identities = 595/595 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaggatcagctcttggcttccaccatgagcctctgaggttgaaatgggattagaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggatcagctcttggcttccaccatgagcctctgaggttgaaatgggattagaa 264

                                                                       
Query: 65  ctcagatctccagccttggtggcaggccctgttacccactgagccatgtcactgaccctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcagatctccagccttggtggcaggccctgttacccactgagccatgtcactgaccctg 324

                                                                       
Query: 125 gtgtaaaaatattctttaagatttttatttttctaaccaggtgtgtatgggaagaggggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgtaaaaatattctttaagatttttatttttctaaccaggtgtgtatgggaagaggggt 384

                                                                       
Query: 185 acatagtgcacataagcacaggtgcctgtagagggcagaagagggactcagcaccctgga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acatagtgcacataagcacaggtgcctgtagagggcagaagagggactcagcaccctgga 444

                                                                       
Query: 245 gctggagtcatagaaaacagaggtctgtgagccaccactatgggtactgggaaccagact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctggagtcatagaaaacagaggtctgtgagccaccactatgggtactgggaaccagact 504

                                                                       
Query: 305 ggggtcctctgcaatagcgcttcctgctcttaacgggaggcagggaggggcatgtttcca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggggtcctctgcaatagcgcttcctgctcttaacgggaggcagggaggggcatgtttcca 564

                                                                       
Query: 365 gcccctgatgcgaggatctccaaagtggccatatgaaaagtaatgcaaagcaaaccaagc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcccctgatgcgaggatctccaaagtggccatatgaaaagtaatgcaaagcaaaccaagc 624

                                                                       
Query: 425 ccgtcttgcacttcaaaatgaacacagagattcattcagaccacttcaacttactgtgct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccgtcttgcacttcaaaatgaacacagagattcattcagaccacttcaacttactgtgct 684

                                                                       
Query: 485 gagctgatcttggctggcaacctgactacatttggaatcatctaaaatataagccctggg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gagctgatcttggctggcaacctgactacatttggaatcatctaaaatataagccctggg 744

                                                                  
Query: 545 ctcacctatgagggcttttcttgattagattatgggacaggagaagagcatccta 599
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctcacctatgagggcttttcttgattagattatgggacaggagaagagcatccta 799


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no279_n04.g1 MSMg01no279_n04.g1 CHROMAT_FILE:
MSMg01no279_n04.g1 PHD_FILE: MSMg01no279_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:31 2005
         (669 letters)



>mm_chr8_34505871_34506939
          Length = 1069

 Score = 1294 bits (669), Expect = 0.0
 Identities = 669/669 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctttttacacctatgcatggtaagctttttaggacatttactaaacagcaatggatttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 tctttttacacctatgcatggtaagctttttaggacatttactaaacagcaatggatttc 810

                                                                       
Query: 61  ctcctgttagagctcaagattatgaaattattggtacaaatcttactgctagtctgaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 ctcctgttagagctcaagattatgaaattattggtacaaatcttactgctagtctgaaga 750

                                                                       
Query: 121 acatgaaggccaatacagcagactctgaagcaaatgagtaagtggcaagaaacgctctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 acatgaaggccaatacagcagactctgaagcaaatgagtaagtggcaagaaacgctctgg 690

                                                                       
Query: 181 acttaggtagctgtatacattgttatccttattgttggtgcattgttttgtggttctatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 acttaggtagctgtatacattgttatccttattgttggtgcattgttttgtggttctatg 630

                                                                       
Query: 241 cttagatctgttgtgaagttttggcatttcaagtgtgtatttttaggtaaagctgcagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 cttagatctgttgtgaagttttggcatttcaagtgtgtatttttaggtaaagctgcagtt 570

                                                                       
Query: 301 tgacagtagctgaggaaaaaatctcatcctaatgacaaatggaaagaaccaacaaactaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tgacagtagctgaggaaaaaatctcatcctaatgacaaatggaaagaaccaacaaactaa 510

                                                                       
Query: 361 actgctctctcatgtcccacttagatcccagacaccaagagaagcaattgagaactgaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 actgctctctcatgtcccacttagatcccagacaccaagagaagcaattgagaactgaaa 450

                                                                       
Query: 421 atacatctgcttttttgaggagagggaggagaaaacagagaaagaactttgtctacaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 atacatctgcttttttgaggagagggaggagaaaacagagaaagaactttgtctacaata 390

                                                                       
Query: 481 gtcaattaattccatggaatttgttcaaaatagaccagctaaattgctactgcaaaccac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gtcaattaattccatggaatttgttcaaaatagaccagctaaattgctactgcaaaccac 330

                                                                       
Query: 541 cactgggccaaagataggcaatcacatggcttgtttcaggaaagtagaatttttaagaca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cactgggccaaagataggcaatcacatggcttgtttcaggaaagtagaatttttaagaca 270

                                                                       
Query: 601 atcaaaatatttatgtgcttatgttctataagctataggtatgctgctcttaaatgctgt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 atcaaaatatttatgtgcttatgttctataagctataggtatgctgctcttaaatgctgt 210

                    
Query: 661 ctttgatag 669
           |||||||||
Sbjct: 209 ctttgatag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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