BAC Information

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BAC

Clone NameMSMg01-279O20
Chromosome8 (Build37)
Map Location 43,829,072 - 43,988,778
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC671994, Zfp353, EG620772, LOC628212
Downstream geneTriml1, LOC622082, EG622117, LOC100039417, Zfp42, Adam26b, Adam26a, EG384813, Adam34, EG384814, LOC100039472, LOC547011, LOC622263
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279O20.T7 (MSMg01no279_o20.b1)MSMg01-279O20.TJ (MSMg01no279_o20.g1)
ACCAG417153AG417154
length755759
length of high quality
(start - end)		587 (46 - 632)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no279_o20.b1 PHD_FILE: MSMg01no279_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:39 2005CHROMAT_FILE: MSMg01no279_o20.g1 PHD_FILE: MSMg01no279_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,988,195 - 43,988,778)(43,829,072 - 43,829,357)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTGTATCTCTCTCATATTTGATTTTTTTAAATTTTATTTATTCA
TTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGT
CAGATCCCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTG
AACTCCTGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCGCTGAGCCAT
CTCACCAGCCCTCTCATATTTGAAAATTTGGTACCTAGTATTTCTTTTGT
TGTAGGCTGTACCACTTGAGACTTATTTCTTAGATCCAGCTGGGTGCAGG
GTAATGACATATCTTTGTTTTACTATGTGCATTAATTAGTGATGAAAATT
AAAGACGTTCTTAGTTGAGCTAGTTTTAAAATAAAGATTACACAACACTA
CTTTGAGGGGAGGAGTTCTCCTCAAAGTTTTGACTCAAAATTTAGGGCTC
AAAAAAAGATGCCATGTGACCAAATTCTGTACAAATACATTTTTAATTGG
ATATTTTCTTTATTTAAATTTCAAATGTTATCTCCTTTCTCAACCCTGCC
CCCCAGATACCCACTATCCCATCCTCCCTCCCCGTGCCTCTATAAGGGCG
TTCCTCCACCCACCCCTCTTTTCACCCCTATTTCTCCCCCTTCCCTTCTC
CCTATCTTTTCCTATTTTTGTTTTCTTTTTCCTCCCTGTCCCTTTTTTTC
TTTTC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTCAGACACTAAAGTTGAATA
TATTTCAAAACACTCATAATAACCTTATATTAAATCTACATATCATCCGT
ATCTTATTTTAAATGCACATGAGCATATATATACATATGTGTGTATACAT
ATTTAACACTATATTTACATACATAATTAAATGTTCCCTTTTTTGCTCAC
ATAGACTTTAGCATGACCAAGAAATCAGGTAAGACTTTTTTTTTTAACAT
ATTTCATTTAACTGTGGTATGTTGGGTCTTGAGATATCTATCACCTACCC
AAAATTTGTATATTCCTTAAAAAAGTTAATTGCCACAAATCTTTTTATAA
AATCTGCTTAGTAATATGATATCAAGAATGAACATGAGAAACTATTTTAA
CAAGCCAAGTTTTGTTTCCCAATTTTCATCAAAAAAATATCACTGGAATA
TCTTTTGTTTTAATTTTAGTGAGGTTTGTAATTATTGGGTAGCTTGGATA
CAAGTCATGTTCACTGAAAAAAAAAAGAGATCACCTGCCTCATTGTGTGA
AAGTTTCAGGTTCATCACTCACAACANACAACATAAAAAAATATTAAAGA
GAAACAATATTTTCTATTAAGGATGCATTTGAATATCAGCCATGTCAGAA
AAATAAGGGCCAACTTCTCCAGATTTTAACTAAAATGACTGAATTTTCAA
CATTAGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_o20.b1 MSMg01no279_o20.b1 CHROMAT_FILE:
MSMg01no279_o20.b1 PHD_FILE: MSMg01no279_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:39 2005
         (587 letters)



>mm_chr8_43987872_43988858
          Length = 987

 Score = 1098 bits (568), Expect = 0.0
 Identities = 580/584 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagtgtatctctctcatatttgatttttttaaattttatttattcattatatgt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 ggaattcagtgtatctctctcatatttgatttttttaaattttatttattcattatatgt 848

                                                                       
Query: 64  aagtacactgtagctgtcttcagacactccagaagagggagtcagatcccgttacggatg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 aagtacactgtagctgtcttcagacactccagaagagggagtcagatcccgttacggatg 788

                                                                       
Query: 124 gttgtgagccaccatgtggttgctgggatttgaactcctgaccttcggaagagcagtcgg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 gttgtgagccaccatgtggttgctgggatttgaactcctgaccttcggaagagcagtcgg 728

                                                                       
Query: 184 gtgctcttacccgctgagccatctcaccagccctctcatatttgaaaatttggtacctag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 gtgctcttacccgctgagccatctcaccagccctctcatatttgaaaatttggtacctag 668

                                                                       
Query: 244 tatttcttttgttgtaggctgtaccacttgagacttatttcttagatccagctgggtgca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tatttcttttgttgtaggctgtaccacttgagacttatttcttagatccagctgggtgca 608

                                                                       
Query: 304 gggtaatgacatatctttgttttactatgtgcattaattagtgatgaaaattaaagacgt 363
           ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 607 gggtaatgacataactttgttttaatatgtgcattaattagtgatgaaaattaaagacgt 548

                                                                       
Query: 364 tcttagttgagctagttttaaaataaagattacacaacactactttgaggggaggagttc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tcttagttgagctagttttaaaataaagattacacaacactactttgaggggaggagttc 488

                                                                       
Query: 424 tcctcaaagttttgactcaaaatttagggctcaaaaaaagatgccatgtgaccaaattct 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tcctcaaagttttgactcaaaatttagggctcaaaaaaagatgccatgtgaccaaattct 428

                                                                       
Query: 484 gtacaaatacatttttaattggatattttctttatttaaatttcaaatgttatctccttt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gtacaaatacatttttaattggatattttctttatttaaatttcaaatgttatctccttt 368

                                                       
Query: 544 ctcaaccctgccccccagatacccactatcccatcctccctccc 587
           |||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 367 ctcagccctgccccccagaaacccactatcccatcctccctccc 324


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no279_o20.g1 MSMg01no279_o20.g1 CHROMAT_FILE:
MSMg01no279_o20.g1 PHD_FILE: MSMg01no279_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:39 2005
         (287 letters)



>mm_chr8_43828872_43829558
          Length = 687

 Score =  553 bits (286), Expect = e-162
 Identities = 286/286 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcttcagacactaaagttgaatatatttcaaaacactcataataaccttatattaaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcttcagacactaaagttgaatatatttcaaaacactcataataaccttatattaaatc 260

                                                                       
Query: 61  tacatatcatccgtatcttattttaaatgcacatgagcatatatatacatatgtgtgtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacatatcatccgtatcttattttaaatgcacatgagcatatatatacatatgtgtgtat 320

                                                                       
Query: 121 acatatttaacactatatttacatacataattaaatgttcccttttttgctcacatagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatatttaacactatatttacatacataattaaatgttcccttttttgctcacatagac 380

                                                                       
Query: 181 tttagcatgaccaagaaatcaggtaagacttttttttttaacatatttcatttaactgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttagcatgaccaagaaatcaggtaagacttttttttttaacatatttcatttaactgtg 440

                                                         
Query: 241 gtatgttgggtcttgagatatctatcacctacccaaaatttgtata 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtatgttgggtcttgagatatctatcacctacccaaaatttgtata 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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