BAC Information

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BAC

Clone NameMSMg01-280F16
Chromosome8 (Build37)
Map Location 30,354,954 - 30,355,292
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666446, LOC100042598, Unc5d
Downstream geneLOC100041237, EG628189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280F16.T7 (MSMg01no280_f16.b1)MSMg01-280F16.TJ (MSMg01no280_f16.g1)
ACCAG417469AG417470
length769829
length of high quality
(start - end)
317 (46 - 362)31 (76 - 106)
definitionCHROMAT_FILE: MSMg01no280_f16.b1 PHD_FILE: MSMg01no280_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:10 2005CHROMAT_FILE: MSMg01no280_f16.g1 PHD_FILE: MSMg01no280_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAACTCCACCTCGAGCTACATATCAAAATCATGGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGGTTTGGTCCTGCACCAGCATTTGATTTAGCAAAA
GCATTTTATGCAGTTATCAAGTAAAAGTCGGTATATTAATAACATTAATC
TTCATAGTTTTGTCCTCATGAGATCATTGGTGACCTTGCGATCAAGTGCA
AATATTTATGTGGGAAGTGGAAATGGTGAGGAAGCAGAAAGGGCTCATGT
AATTTATCTCAGGCCCTTACTCATGTATTATTTATTGCTCTTTTAAGAAG
TTTAAGAGTGTGTTAAAGTAACTCCCCGNACCCACCCAGGTATAGAAAGA
TCAAGAAGAGATTTGGGGGAAGATTTGAAAAAAAAAAGAAATTCATTTTG
GGGTAGGTTTTTTCTTTAGGCGTACAAAGAAAAAAATCATATTTATATTC
ATATTTGGAGAAAATGTCCCCTTCAGCAAGCCCACACTGATTTGGGGGGA
GGTCCCTATGCATTGATTTCTTGTATACTTTCCTGTTTTTTTTTTTATTT
TGCAAATATATAGTTGCGATGTGCAGTCTATATCTATGTTCATTTATTTA
ATCTCTGGTACTTAAAAGTTTTCATTGTGAAGTCATTGGCATCATAATTA
TACTTTGGATCTACTAGCTACCCATTAGGAGAGATGAATAAGTTTTATTA
CCATGTGCTTATCCGCCTT
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGCGGTTAAAGCCATCTGTGTTTCT
CAAGTATGAGGGTTTGTGATTGTGCGTGTGAGAGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGAGAGTGTATGACATCAATAAATAAACTAACAGATTAAA
AAATAAATAAAATAAAAATTATATAAAAACAATCTCATTATTAAATAATT
CCATTCTTATATTACATAAATAAAATAATAAAAAAAAAAAAAAAATAAAA
ACTATAATAATAAATACAAAATATATTATTTATAAATAAATCAATAAATA
AAAAAAAAAATTTTAAAATAAACTCCAGAAACAAGACCCCAAATTAAATT
TTATATTTTGATTTTTTGTCTCCTCTAAAAAAATCCTATTAAAAAAATTG
TGTTGGGGGTGGGGTTCTTTCATTAATAATTCTATAACAAAATAAATATA
AAATTCATTAACTAATAAAATAAATATTTAAAAATAAATAAAAATTAAAC
AAAAAATCTTAATATATAATAAAAAATAAAAACAAAAAATATTAAATATA
ATTAATACACAATAAAAAAAAATAATCAAAAAATTGAAAAAAAAAACATA
AATTAATAATTACAACTGTTATAAAAATATATTTATATATTTAAATAAAT
CTATTTATTATAAAATATAAAATAATAATATATTAAAAAAAATAATAATA
TAATAATAATATTTAGAATAAACTATTATATAATAATATATAATAAAAAA
TATATATAATTTTATAAATATATACCAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_f16.b1 MSMg01no280_f16.b1 CHROMAT_FILE:
MSMg01no280_f16.b1 PHD_FILE: MSMg01no280_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:10 2005
         (317 letters)



>mm_chr8_30354776_30355492
          Length = 717

 Score =  489 bits (253), Expect = e-143
 Identities = 306/339 (90%), Gaps = 26/339 (7%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaactccacctcgagctacatatcaaaatcatg--------gtgtgtgtgtgtgt 56
           |||||||||||||| | |||||||||||||||||||||        ||||||||||||||
Sbjct: 179 gaattcaactccactttgagctacatatcaaaatcatggtatgtgtgtgtgtgtgtgtgt 238

                                                                       
Query: 57  gtgtgtgtgtgtgtg---------gtt---------tggtcctgcaccagcatttgattt 98
           |||||||||||||||         |||         ||||  ||||||||||||||||||
Sbjct: 239 gtgtgtgtgtgtgtgtttgtgtgtgtttgtgtagtgtggtaatgcaccagcatttgattt 298

                                                                       
Query: 99  agcaaaagcattttatgcagttatcaagtaaaagtcggtatattaataacattaatcttc 158
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 299 agcaaaagcattttatgcagttatcaagtaaaagtgggtatattaataacattaatcttc 358

                                                                       
Query: 159 atagttttgtcctcatgagatcattggtgaccttgcgatcaagtgcaaatatttatgtgg 218
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 359 atagttttgtcctcatgagatcattggtgaccttgcgatcaagtacaaatatttatgtgg 418

                                                                       
Query: 219 gaagtggaaatggtgaggaagcagaaagggctcatgtaatttatctcaggcccttactca 278
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gaagtggaaatggtgaggaagcagaaagggctcatgtaatttatctcaggcccttactca 478

                                                  
Query: 279 tgtattatttattgctcttttaagaagtttaagagtgtg 317
           |||| ||||||||||||||||||||||||||||||||||
Sbjct: 479 tgtaatatttattgctcttttaagaagtttaagagtgtg 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)