BAC Information

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BAC

Clone NameMSMg01-280I21
Chromosome8 (Build37)
Map Location 66,900,548 - 66,900,795
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384831, EG244495, Tll1, LOC100040989
Downstream geneCpe, Sc4mol, Klhl2, LOC100040903, LOC619647, 3110005G23Rik, Trim75, Trim60, LOC665388, LOC665396, LOC100040949, LOC665405, Vaultrc-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280I21.T7 (MSMg01no280_i21.b1)MSMg01-280I21.TJ (MSMg01no280_i21.g1)
ACCAG417617AG417618
length715727
length of high quality
(start - end)
327 (318 - 644)248 (74 - 321)
definitionCHROMAT_FILE: MSMg01no280_i21.b1 PHD_FILE: MSMg01no280_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:25 2005CHROMAT_FILE: MSMg01no280_i21.g1 PHD_FILE: MSMg01no280_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCGGAGGAGCCGCGGAATTCTTCTT
TTTACAACAAAAAATTTGAATTCTTGATATAATAAAATTTCTGCTGGTCA
TGTTTCCTAACCCCGTCTGTTAACAGAAAGATCATTGACCCTCAACTAAA
GCATTTGCTTTAAAATAATAAAACTTATCCATCCATTGTTTATCAGATTT
TAAAAATATGGAAGACAGAGGTGTGTAACTATTCTCCCCCCCCCCACTCT
CCCTCCTTCTTTAAACAGGGTTTTTCTATGTAGCTCTGGCTAGCCTGGGA
CTCACTAGGTAGTCATTCTGACTTTGAACTCACAAGGATCTGCCTGCCTC
TGCCTCCTGGAAGCTGAAATTAAAGGTGTGTGCTGGCACCATTGCTTTTT
GTTGTTGCTGTTGTTTTGTTTTGTTTTATATTTTTCGAGACAGGGTTTCT
CTCTGTAACCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGTTGGCCT
TGAACTCAGAAATTCGCCTGTCTCTGCCTCCCAAGTGCTGGGATTAAAGG
TATGAGTGAGGTAACCCAATCACAAAAGAACTCAAATGATATGTACTCAC
TGATAAGTGGATATTAGCCCAGAAACTTAGGATATCCAAGATATAAGTTA
CAATTTGCAAAACACATGATACTCAAGAAGAACAAAGACCATAGTGTGGA
CACTTTGCCCGTTCA
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACAAAATTCTCTCCGGGGAGTATTCCAATCCAT
TGTCTCCAGGAAGGAAAATTTATCAACCTTGATAAAATAAAAGAGAGTTT
AGAAATCAAAAGGGCCCTTGGAGGTTTTAAGTGGCTTTGTTTTTATTTAT
ATATTTTTAGATAGCAGTTTCCCTTCCTCCCTTCTCTCTCCCTTTCTCTT
CTCTCTCCTCTTTCCTTTTGACAAGACTCCATGTATCTGGACAGCCCTGT
GGTCACTGTGCATTTGAGAAGAATTTGTGTTTATGATATGATTGCCTCTA
CTTCCCAGGTGCTGTTTTTACAGGCCCGCACCGCCAGGCTCAGTTTAATG
TTGCACTGGAGATGGCCGTGCATAGATCTAGAGATTTGTGCCTACCAGAC
AAGCACTCTGCTCACTGAGCTACATCTCCAGTCTGCCTTCATTCCTAAAC
AATAAAAACAAACAGACAAATACTTATAATATGTAAATTATTTTTAAAAT
TTCACTAAACTTACATCATTTCCTCTCCTGCCTCTTCTCTCCTTCCACAC
TCCCACTCGATCCTCTCCACAACGCAGAGAGGTCTCGTCTTCTTTAACTA
TTTTTGTTACATTCACATATAAATGAATAAATAAAGGCCTACAGCCTTCT
GAGTCCATTCAATGTTGCCTATATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_i21.g1 MSMg01no280_i21.g1 CHROMAT_FILE:
MSMg01no280_i21.g1 PHD_FILE: MSMg01no280_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:25 2005
         (248 letters)



>mm_chr8_66900451_66901098
          Length = 648

 Score =  441 bits (228), Expect = e-128
 Identities = 243/248 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctctccggggagtattccaatccattgtctccaggaaggaaaatttatcaaccttgat 60
           |||||||||||||||||||||||||||||||||||||||||||||   ||||| ||||||
Sbjct: 345 ttctctccggggagtattccaatccattgtctccaggaaggaaaacaaatcaatcttgat 286

                                                                       
Query: 61  aaaataaaagagagtttagaaatcaaaagggcccttggaggttttaagtggctttgtttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aaaataaaagagagtttagaaatcaaaagggcccttggaggttttaagtggctttgtttt 226

                                                                       
Query: 121 tatttatatatttttagatagcagtttcccttcctcccttctctctccctttctcttctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 tatttatatatttttagatagcagtttcccttcctcccttctctctccctttctcttctc 166

                                                                       
Query: 181 tctcctctttccttttgacaagactccatgtatctggacagccctgtggtcactgtgcat 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 tctcctctttcctttcgacaagactccatgtatctggacagccctgtggtcactgtgcat 106

                   
Query: 241 ttgagaag 248
           ||||||||
Sbjct: 105 ttgagaag 98


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)